RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1160211" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1160211 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31304321 31304321 PRJNA1160211_S_NODE_86135_length_485_cov_5.053398_g84915_i0 PRJNA1160211 86135 485 5.053398 24.5089803 Lujinxingiaceae bacterium 2946527 Bacteria Bacteria 171 2.11e-46   NR MBA2663789.1 2946527 g84915 i0 56.7 1.92371134020619 157 63 94.6 3 25 483 188 343 MBA2663789.1 OmpA family protein [Lujinxingiaceae bacterium] diamond 933 171 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae   Lujinxingiaceae bacterium
31778699 31778699 PRJNA1160211_S_NODE_115417_length_429_cov_4.567416_g114188_i0 PRJNA1160211 115417 429 4.567416 19.59421464 Lujinxingiaceae bacterium 2946527 Bacteria Bacteria 135 8.7e-35   NR MBA2662318.1 2946527 g114188 i0 44.8 1 143 77 98.6 1 6 428 212 354 MBA2662318.1 response regulator [Lujinxingiaceae bacterium] diamond 429 135 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae   Lujinxingiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;