RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1159911" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1159911 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27008547 27008547 PRJNA1159911_P_NODE_18082_length_700_cov_2.548644_g17577_i0 PRJNA1159911 18082 700 2.548644 17.840508 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 87.4 2.53e-18   NR HEY6436480.1 2651163 g17577 i0 57.5 0.342857142857143 80 32 33.4 1 640 407 8 87 HEY6436480.1 hypothetical protein [Ignavibacteriaceae bacterium] diamond 240 87.4 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium
30325298 30325298 PRJNA1159911_P_NODE_41192_length_394_cov_2.009346_g40650_i0 PRJNA1159911 41192 394 2.009346 7.91682324 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 70.1 5.61e-11   NR MDR3626209.1 2651163 g40650 i0 73 1.61421319796954 37 10 28.2 0 4 114 928 964 MDR3626209.1 aminomethyl-transferring glycine dehydrogenase [Ignavibacteriaceae bacterium] diamond 636 70.1 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium
30640559 30640559 PRJNA1159911_P_NODE_92373_length_247_cov_0.885057_g91831_i0 PRJNA1159911 92373 247 0.885057 2.18609079 Melioribacteraceae bacterium 2614255 Bacteria Bacteria 72 1.87e-12   NR MFA5803660.1 2614255 g91831 i0 52.1 1.66396761133603 71 34 86.2 0 14 226 343 413 MFA5803660.1 hypothetical protein [Melioribacteraceae bacterium] diamond 411 72 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae   Melioribacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;