RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1159911" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1159911 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1582439 1582439 PRJNA1159911_P_NODE_41982_length_389_cov_1.705696_g41440_i0 PRJNA1159911 41982 389 1.705696 6.63515744 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 179 8.109999999999997e-55   NR AAT09077.1 227086 g41440 i0 72.1 0.940874035989717 122 34 94.1 0 23 388 1 122 AAT09077.1 transcription factor BTF3 [Bigelowiella natans] diamond 366 179 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
10510957 10510957 PRJNA1159911_P_NODE_13629_length_849_cov_3.186856_g13166_i0 PRJNA1159911 13629 849 3.186856 27.05640744 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 427 4.25e-146   NR MES1909605.1 1215613 g13166 i0 72.4 3.98586572438163 283 78 100 0 1 849 109 391 MES1909605.1 hypothetical protein [Cercozoa sp. M6MM] diamond 3384 429 0.995337995337995 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
27798715 27798715 PRJNA1159911_P_NODE_75544_length_271_cov_2.313131_g75002_i0 PRJNA1159911 75544 271 2.313131 6.26858501 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 109 2.11e-28   NR ADK47156.1 323453 g75002 i0 98.1 0.586715867158672 53 1 58.7 0 270 112 93 145 ADK47156.1 ribosomal protein S23a [Heteromita sp. PRA-74] diamond 159 109 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;