RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1158727" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1158727 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29933519 29933519 PRJNA1158727_P_NODE_138051_length_250_cov_0.870056_g130589_i0 PRJNA1158727 138051 250 0.870056 2.17514 Candidatus Phytoplasma 33926 Bacteria Bacteria 45.8 9.19e-4   NR WIA07873.1 72990 g130589 i0 100 0.48 20 0 24 0 2 61 102 121 WIA07873.1 MAG: hypothetical protein BGWL_c3890 [Candidatus Phytoplasma cynodontis] diamond 120 45.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma cynodontis
30608945 30608945 PRJNA1158727_P_NODE_44893_length_553_cov_2.737500_g37460_i0 PRJNA1158727 44893 553 2.7375 15.138375 Candidatus Phytoplasma oryzae 203274 Bacteria Bacteria 134 2.16e-36   NR WCA22270.1 203274 g37460 i0 48.2 0.889692585895118 164 79 87.3 6 36 518 1 161 WCA22270.1 hypothetical protein PIE28_01370 [Candidatus Phytoplasma oryzae] diamond 492 134 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma oryzae
31841808 31841808 PRJNA1158727_P_NODE_88737_length_316_cov_1.584362_g81276_i0 PRJNA1158727 88737 316 1.584362 5.00658392 Candidatus Phytoplasma oryzae 203274 Bacteria Bacteria 52.8 2.28e-5   NR WCA22406.1 203274 g81276 i0 34.6 1.01582278481013 107 66 99.7 4 315 1 184 288 WCA22406.1 hypothetical protein PIE28_02095 [Candidatus Phytoplasma oryzae] diamond 321 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma oryzae
32569959 32569959 PRJNA1158727_P_NODE_113199_length_275_cov_1.980198_g105738_i0 PRJNA1158727 113199 275 1.980198 5.4455445 Candidatus Phytoplasma sacchari 2609813 Bacteria Bacteria 121 1.59e-33   NR WP_153368957.1 2609813 g105738 i0 88.7 0.774545454545455 71 8 77.5 0 2 214 4 74 WP_153368957.1 cyclic-di-AMP receptor [Candidatus Phytoplasma sacchari] diamond 213 121 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma sacchari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;