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contig_metadata

10 rows where analysis = "diamond", bioproject = "PRJNA1158727" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1158727 · 10 ✖

analysis 1

  • diamond · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20706910 20706910 PRJNA1158727_P_NODE_46777_length_532_cov_1.490196_g39331_i0 PRJNA1158727 46777 532 1.490196 7.92784272 Thiovulum sp. ES 1177931 Bacteria Bacteria 61.2 3.89e-8   NR EJF07124.1 1177931 g39331 i0 47.7 0.366541353383459 65 34 36.7 0 63 257 16 80 EJF07124.1 ankyrin repeat-containing protein [Thiovulum sp. ES] diamond 195 61.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Thiovulum Thiovulum sp. ES
26723309 26723309 PRJNA1158727_P_NODE_98021_length_296_cov_15.242152_g90560_i0 PRJNA1158727 98021 296 15.242152 45.11676992 Helicobacter pylori 210 Bacteria Bacteria 53.5 2.92e-7   NR GAA8733141.1 210 g90560 i0 61.9 1.71283783783784 42 15 41.6 1 221 99 3 44 GAA8733141.1 hypothetical protein Kyoto147A_1080 [Helicobacter pylori] diamond 507 53.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27166587 27166587 PRJNA1158727_P_NODE_132602_length_253_cov_1.711111_g125141_i0 PRJNA1158727 132602 253 1.711111 4.32911083 Helicobacter pylori 210 Bacteria Bacteria 54.3 1.58e-7   NR GAA6777078.1 210 g125141 i0 51 0.604743083003953 51 23 58.1 1 42 188 16 66 GAA6777078.1 hypothetical protein Kyoto199A_4850 [Helicobacter pylori] diamond 153 54.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27419859 27419859 PRJNA1158727_P_NODE_84083_length_328_cov_1.568627_g76622_i0 PRJNA1158727 84083 328 1.568627 5.14509656 Sulfurovum sp. 1969726 Bacteria Bacteria 48.9 5.31e-4   NR TQV62730.1 1969726 g76622 i0 43.5 0.777439024390244 85 39 70.4 3 8 238 151 234 TQV62730.1 MAG: hypothetical protein FNT15_05840, partial [Sulfurovum sp.] diamond 255 48.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp.
28651045 28651045 PRJNA1158727_P_NODE_85427_length_324_cov_4.123506_g77966_i0 PRJNA1158727 85427 324 4.123506 13.36015944 Helicobacter pylori 210 Bacteria Bacteria 100 6.28e-25   NR GAA6953583.1 210 g77966 i0 92.6 0.62962962962963 68 5 63 0 14 217 1 68 GAA6953583.1 hypothetical protein Kyoto211A_0880 [Helicobacter pylori] diamond 204 100 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29345684 29345684 PRJNA1158727_P_NODE_45049_length_551_cov_2.550209_g37614_i0 PRJNA1158727 45049 551 2.550209 14.05165159 Helicobacter pylori 210 Bacteria Bacteria 73.2 9.31e-14   NR GAA8832561.1 210 g37614 i0 100 0.784029038112523 32 0 17.4 0 337 242 1 32 GAA8832561.1 hypothetical protein Kyoto149A_4760 [Helicobacter pylori] diamond 432 73.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30893532 30893532 PRJNA1158727_P_NODE_102954_length_288_cov_1.706977_g95493_i0 PRJNA1158727 102954 288 1.706977 4.91609376 Helicobacter pylori 210 Bacteria Bacteria 44.7 0.0015   NR GAA9197671.1 210 g95493 i0 58.5 0.427083333333333 41 17 42.7 0 154 276 1 41 GAA9197671.1 hypothetical protein Kyoto193A_4420 [Helicobacter pylori] diamond 123 44.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32158529 32158529 PRJNA1158727_P_NODE_164778_length_238_cov_2.557576_g157316_i0 PRJNA1158727 164778 238 2.557576 6.08703088 Campylobacterota bacterium 2026809 Bacteria Bacteria 129 1.63e-32   NR MCB9493031.1 2026809 g157316 i0 70.5 0.983193277310924 78 23 98.3 0 236 3 828 905 MCB9493031.1 hypothetical protein [Campylobacterota bacterium] diamond 234 129 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
32569978 32569978 PRJNA1158727_P_NODE_163859_length_241_cov_0.916667_g156397_i0 PRJNA1158727 163859 241 0.916667 2.20916747 Helicobacter pylori 210 Bacteria Bacteria 63.9 1.27e-11   NR GAA8812112.1 210 g156397 i0 63.6 0.547717842323652 44 16 54.8 0 194 63 4 47 GAA8812112.1 hypothetical protein Kyoto149A_3190 [Helicobacter pylori] diamond 132 63.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32758583 32758583 PRJNA1158727_P_NODE_109560_length_280_cov_1.396135_g102099_i0 PRJNA1158727 109560 280 1.396135 3.909178 Aliarcobacter butzleri 28197 Bacteria Bacteria 128 5.6199999999999995e-32   NR WP_237937133.1 28197 g102099 i0 68.8 5.97857142857143 93 27 99.6 1 2 280 776 866 WP_237937133.1 PAS domain S-box protein [Aliarcobacter butzleri] diamond 1674 128 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;