RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1158727" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA1158727 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
304283 304283 PRJNA1158727_P_NODE_157261_length_243_cov_0.905882_g149799_i0 PRJNA1158727 157261 243 0.905882 2.20129326 Deinococcus taklimakanensis 536443 Bacteria Bacteria 87.4 7.21e-18   NR WP_386846772.1 536443 g149799 i0 100 0.518518518518518 42 0 51.9 0 126 1 1 42 WP_386846772.1 malto-oligosyltrehalose synthase [Deinococcus taklimakanensis] diamond 126 87.4 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus taklimakanensis
6681895 6681895 PRJNA1158727_P_NODE_143606_length_248_cov_0.880000_g136144_i0 PRJNA1158727 143606 248 0.88 2.1824 Deinococcus radiomollis 468916 Bacteria Bacteria 133 1.87e-37   NR WP_407539156.1 468916 g136144 i0 83.8 1.93548387096774 80 13 96.8 0 247 8 102 181 WP_407539156.1 RecX family transcriptional regulator [Deinococcus radiomollis] diamond 480 133 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiomollis
27166602 27166602 PRJNA1158727_P_NODE_157702_length_243_cov_0.905882_g150240_i0 PRJNA1158727 157702 243 0.905882 2.20129326 Deinococcus misasensis 392413 Bacteria Bacteria 67.8 2.12e-12   NR WP_034340598.1 392413 g150240 i0 79.1 0.530864197530864 43 9 53.1 0 130 2 1 43 WP_034340598.1 hypothetical protein [Deinococcus misasensis] diamond 129 67.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus misasensis
29503322 29503322 PRJNA1158727_P_NODE_121150_length_266_cov_1.404145_g113689_i0 PRJNA1158727 121150 266 1.404145 3.7350257 Meiothermus sp. Pnk-1 873128 Bacteria Bacteria 145 5.34e-38   NR WP_110528672.1 873128 g113689 i0 98.6 0.834586466165414 74 1 83.5 0 45 266 1 74 WP_110528672.1 DNA polymerase III subunit alpha [Meiothermus sp. Pnk-1] diamond 222 145 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus sp. Pnk-1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;