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contig_metadata

36 rows where analysis = "diamond", bioproject = "PRJNA1156092" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 36 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1156092 · 36 ✖

analysis 1

  • diamond · 36 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21979452 21979452 PRJNA1156092_P_NODE_12758_length_320_cov_1.246964_g12628_i0 PRJNA1156092 12758 320 1.246964 3.9902848 root 1 Root_unresolved Root_unresolved 103 5.28e-26   NR KAE8577506.1 8364 g12628 i0 94.1 31.078125 51 3 47.8 0 320 168 83 133 KAE8577506.1 hypothetical protein XENTR_v10004594 [Xenopus tropicalis] diamond 9945 103 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
26692046 26692046 PRJNA1156092_P_NODE_32801_length_241_cov_0.916667_g32671_i0 PRJNA1156092 32801 241 0.916667 2.20916747 Myodes glareolus 447135 Chordata Chordata 51.2 9.34e-6   NR KAK7800748.1 447135 g32671 i0 67.5 0.49792531120332 40 13 49.8 0 231 112 99 138 KAK7800748.1 hypothetical protein U0070_014921 [Myodes glareolus] diamond 120 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Myodes Myodes glareolus
26850619 26850619 PRJNA1156092_P_NODE_19261_length_268_cov_2.246154_g19131_i0 PRJNA1156092 19261 268 2.246154 6.01969272 Falco cherrug 345164 Chordata Chordata 46.6 0.00219   NR XP_055556352.1 345164 g19131 i0 54.5 0.615671641791045 55 21 60.4 3 4 165 21 72 XP_055556352.1 translation initiation factor IF-2-like [Falco cherrug] diamond 165 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Falconiformes Falconidae Falco Falco cherrug
26882237 26882237 PRJNA1156092_P_NODE_25281_length_248_cov_0.880000_g25151_i0 PRJNA1156092 25281 248 0.88 2.1824 Cricetulus griseus 10029 Chordata Chordata 63.2 2.26e-10   NR EGW02070.1 10029 g25151 i0 68.3 0.495967741935484 41 13 49.6 0 201 79 32 72 EGW02070.1 Retrovirus-related Pol polyprotein LINE-1 [Cricetulus griseus] diamond 123 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
27166570 27166570 PRJNA1156092_P_NODE_7242_length_398_cov_2.643077_g7112_i0 PRJNA1156092 7242 398 2.643077 10.51944646 Petromyzon marinus 7757 Chordata Chordata 124 6.73e-34   NR XP_032814458.1 7757 g7112 i0 57 1.83165829145729 121 52 91.2 0 380 18 3 123 XP_032814458.1 60S ribosomal protein L35 isoform X2 [Petromyzon marinus] diamond 729 124 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
27609114 27609114 PRJNA1156092_P_NODE_10984_length_338_cov_1.203774_g10854_i0 PRJNA1156092 10984 338 1.203774 4.06875612 Clavelina lepadiformis 159417 Chordata Chordata 128 8.82e-32   NR CAK8689709.1 159417 g10854 i0 72.1 2.95562130177515 111 31 98.5 0 336 4 647 757 CAK8689709.1 unnamed protein product [Clavelina lepadiformis] diamond 999 128 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
27956368 27956368 PRJNA1156092_P_NODE_30765_length_243_cov_0.905882_g30635_i0 PRJNA1156092 30765 243 0.905882 2.20129326 Pelobates cultripes 61616 Chordata Chordata 47.8 5.66e-4   NR CAH2305170.1 61616 g30635 i0 45.9 0.45679012345679 37 20 45.7 0 38 148 131 167 CAH2305170.1 Hypothetical predicted protein, partial [Pelobates cultripes] diamond 111 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Pelobates Pelobates cultripes
28177084 28177084 PRJNA1156092_P_NODE_28966_length_244_cov_0.900585_g28836_i0 PRJNA1156092 28966 244 0.900585 2.1974274 Gekko japonicus 146911 Chordata Chordata 84 1.15e-16   NR XP_015272169.1 146911 g28836 i0 64.1 1.57377049180328 64 23 78.7 0 51 242 1205 1268 XP_015272169.1 PREDICTED: epithelial chloride channel protein-like [Gekko japonicus] diamond 384 84 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Gekkonidae Gekko Gekko japonicus
28322911 28322911 PRJNA1156092_P_NODE_25406_length_248_cov_0.880000_g25276_i0 PRJNA1156092 25406 248 0.88 2.1824 Rodentia 9989 Chordata Chordata 45.1 0.00608   NR ERE63208.1 10029 g25276 i0 50 1.00403225806452 38 19 46 0 156 43 190 227 ERE63208.1 iduronate 2-sulfatase-like protein [Cricetulus griseus] diamond 249 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
28430049 28430049 PRJNA1156092_P_NODE_22386_length_251_cov_0.865169_g22256_i0 PRJNA1156092 22386 251 0.865169 2.17157419 Polypterus senegalus 55291 Chordata Chordata 85.1 5e-17   NR MBN3292877.1 55291 g22256 i0 63.9 1.45816733067729 61 22 72.9 0 16 198 1 61 MBN3292877.1 ZMYM1 protein [Polypterus senegalus] diamond 366 85.1 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
28461733 28461733 PRJNA1156092_P_NODE_30446_length_243_cov_0.905882_g30316_i0 PRJNA1156092 30446 243 0.905882 2.20129326 Nothoprocta ornata 83376 Chordata Chordata 68.6 2.67e-12   NR NWY06171.1 83376 g30316 i0 86.1 9.20987654320988 36 5 44.4 0 24 131 51 86 NWY06171.1 NIPS1 protein [Nothoprocta ornata] diamond 2238 68.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Nothoprocta Nothoprocta ornata
28575544 28575544 PRJNA1156092_P_NODE_26487_length_247_cov_0.885057_g26357_i0 PRJNA1156092 26487 247 0.885057 2.18609079 Lepidosauria 8504 Chordata Chordata 51.6 2.97e-5   NR XP_059576607.1 8496 g26357 i0 91.3 10.6153846153846 23 2 27.9 0 69 1 438 460 XP_059576607.1 1,4-alpha-glucan-branching enzyme isoform X1 [Alligator mississippiensis] diamond 2622 51.6 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
28619560 28619560 PRJNA1156092_P_NODE_24307_length_249_cov_0.875000_g24177_i0 PRJNA1156092 24307 249 0.875 2.17875 Colius striatus 57412 Chordata Chordata 85.9 3.05e-20   NR KFP30128.1 57412 g24177 i0 84.8 7.53012048192771 46 7 55.4 0 25 162 1 46 KFP30128.1 Ryanodine receptor 2, partial [Colius striatus] diamond 1875 86.3 0.995365005793743 Eukaryota Opisthokonta Metazoa Chordata Aves Coliiformes Coliidae Colius Colius striatus
28619565 28619565 PRJNA1156092_P_NODE_28887_length_244_cov_1.350877_g28757_i0 PRJNA1156092 28887 244 1.350877 3.29613988 Ambystoma mexicanum 8296 Chordata Chordata 45.4 0.00306   NR XP_069511395.1 8296 g28757 i0 85.7 1.7827868852459 21 3 25.8 0 67 5 90 110 XP_069511395.1 rho GDP-dissociation inhibitor 1 [Ambystoma mexicanum] diamond 435 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
28840313 28840313 PRJNA1156092_P_NODE_32308_length_241_cov_0.916667_g32178_i0 PRJNA1156092 32308 241 0.916667 2.20916747 Cricetulus griseus 10029 Chordata Chordata 64.7 2.42e-11   NR EGW09648.1 10029 g32178 i0 56.7 0.746887966804979 60 25 74.7 1 6 185 7 65 EGW09648.1 hypothetical protein I79_012745 [Cricetulus griseus] diamond 180 64.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
28998605 28998605 PRJNA1156092_P_NODE_27628_length_246_cov_0.890173_g27498_i0 PRJNA1156092 27628 246 0.890173 2.18982558 Rattus norvegicus 10116 Chordata Chordata 45.1 0.00582   NR EDL84130.1 10116 g27498 i0 42.6 5.15853658536585 47 27 57.3 0 66 206 24 70 EDL84130.1 neural precursor cell expressed, developmentally down-regulated gene 4A, isoform CRA_e [Rattus norvegicus] diamond 1269 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
29250672 29250672 PRJNA1156092_P_NODE_23329_length_250_cov_0.870056_g23199_i0 PRJNA1156092 23329 250 0.870056 2.17514 Phodopus roborovskii 109678 Chordata Chordata 86.7 1.11e-17   NR XP_051063841.1 109678 g23199 i0 57.1 1.008 84 32 96 1 245 6 327 410 XP_051063841.1 protein FAM90A27P-like [Phodopus roborovskii] diamond 252 86.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Phodopus Phodopus roborovskii
29345632 29345632 PRJNA1156092_P_NODE_27169_length_246_cov_0.890173_g27039_i0 PRJNA1156092 27169 246 0.890173 2.18982558 Hypanus sabinus 79690 Chordata Chordata 103 7.96e-24   NR XP_059819192.1 79690 g27039 i0 77.3 0.804878048780488 66 15 80.5 0 47 244 317 382 XP_059819192.1 uncharacterized protein LOC132390609 [Hypanus sabinus] diamond 198 103 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
29408656 29408656 PRJNA1156092_P_NODE_10689_length_342_cov_1.000000_g10559_i0 PRJNA1156092 10689 342 1 3.42 Hypanus sabinus 79690 Chordata Chordata 45.4 0.0123   NR XP_059847885.1 79690 g10559 i0 62.5 0.280701754385965 32 12 28.1 0 75 170 331 362 XP_059847885.1 methylthioribose-1-phosphate isomerase isoform X1 [Hypanus sabinus] diamond 96 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
29439964 29439964 PRJNA1156092_P_NODE_28530_length_245_cov_0.895349_g28400_i0 PRJNA1156092 28530 245 0.895349 2.19360505 Microtus ochrogaster 79684 Chordata Chordata 46.6 0.00165   NR KAH0516375.1 79684 g28400 i0 75 0.391836734693878 32 5 35.5 1 164 78 116 147 KAH0516375.1 Branched-chain-amino-acid aminotransferase, cytosolic [Microtus ochrogaster] diamond 96 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Microtus Microtus ochrogaster
29755869 29755869 PRJNA1156092_P_NODE_26911_length_246_cov_0.890173_g26781_i0 PRJNA1156092 26911 246 0.890173 2.18982558 Cricetulus griseus 10029 Chordata Chordata 85.9 3.81e-18   NR ERE75952.1 10029 g26781 i0 65.7 5.97560975609756 70 24 85.4 0 238 29 12 81 ERE75952.1 E3 ubiquitin-protein ligase, partial [Cricetulus griseus] diamond 1470 85.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
30198068 30198068 PRJNA1156092_P_NODE_28932_length_244_cov_0.900585_g28802_i0 PRJNA1156092 28932 244 0.900585 2.1974274 Cricetulus griseus 10029 Chordata Chordata 48.9 1.83e-4   NR ERE84897.1 10029 g28802 i0 61.1 0.442622950819672 36 14 44.3 0 36 143 48 83 ERE84897.1 hypothetical protein H671_2g5626 [Cricetulus griseus] diamond 108 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
30293485 30293485 PRJNA1156092_P_NODE_14212_length_307_cov_0.987179_g14082_i0 PRJNA1156092 14212 307 0.987179 3.03063953 Leucoraja erinaceus 7782 Chordata Chordata 46.6 0.00322   NR XP_055514746.1 7782 g14082 i0 44.9 1.87622149837134 49 27 47.9 0 300 154 80 128 XP_055514746.1 uncharacterized protein LOC129711249 [Leucoraja erinaceus] diamond 576 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
30313011 30313011 PRJNA1156092_P_NODE_32752_length_241_cov_0.916667_g32622_i0 PRJNA1156092 32752 241 0.916667 2.20916747 Chordata 7711 Chordata Chordata 43.5 0.00506   NR XP_060483053.1 9690 g32622 i0 95.2 4.96680497925311 21 1 26.1 0 143 81 19 39 XP_060483053.1 protein SDA1 homolog [Panthera onca] diamond 1197 43.9 0.990888382687927 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Panthera Panthera onca
30564894 30564894 PRJNA1156092_P_NODE_30393_length_243_cov_0.905882_g30263_i0 PRJNA1156092 30393 243 0.905882 2.20129326 root 1 Root_unresolved Root_unresolved 147 8.429999999999998e-39   NR ERE66291.1 10029 g30263 i0 90.1 2 81 8 100 0 1 243 123 203 ERE66291.1 CD177 antigen [Cricetulus griseus] diamond 486 147 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
30577178 30577178 PRJNA1156092_P_NODE_20373_length_261_cov_1.228723_g20243_i0 PRJNA1156092 20373 261 1.228723 3.20696703 Fregetta grallaria 79628 Chordata Chordata 45.8 0.0037   NR NXW03649.1 79628 g20243 i0 75 2.77011494252874 28 7 32.2 0 6 89 307 334 NXW03649.1 DPOLN polymerase [Fregetta grallaria] diamond 723 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Procellariiformes   Fregetta Fregetta grallaria
30672120 30672120 PRJNA1156092_P_NODE_30273_length_243_cov_0.905882_g30143_i0 PRJNA1156092 30273 243 0.905882 2.20129326 Pleurodeles waltl 8319 Chordata Chordata 58.5 7.87e-9   NR KAJ1151442.1 8319 g30143 i0 51.1 2.77777777777778 45 22 55.6 0 2 136 17 61 KAJ1151442.1 hypothetical protein NDU88_004223 [Pleurodeles waltl] diamond 675 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
30672121 30672121 PRJNA1156092_P_NODE_31153_length_242_cov_0.911243_g31023_i0 PRJNA1156092 31153 242 0.911243 2.20520806 Peromyscus californicus insignis 564181 Chordata Chordata 45.4 0.00289   NR XP_052600304.1 564181 g31023 i0 48.7 0.483471074380165 39 20 48.3 0 234 118 119 157 XP_052600304.1 bcl-2 homologous antagonist/killer isoform X3 [Peromyscus californicus insignis] diamond 117 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Peromyscus Peromyscus californicus
30703738 30703738 PRJNA1156092_P_NODE_16394_length_289_cov_0.962963_g16264_i0 PRJNA1156092 16394 289 0.962963 2.78296307 Polypterus senegalus 55291 Chordata Chordata 69.7 2.15e-11   NR KAG2455213.1 55291 g16264 i0 69.6 0.477508650519031 46 14 47.8 0 289 152 15 60 KAG2455213.1 RBM5 protein, partial [Polypterus senegalus] diamond 138 69.7 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31114349 31114349 PRJNA1156092_P_NODE_16315_length_289_cov_1.425926_g16185_i0 PRJNA1156092 16315 289 1.425926 4.12092614 Ranitomeya imitator 111125 Chordata Chordata 63.2 4.33e-9   NR CAJ0933392.1 111125 g16185 i0 62.5 0.498269896193772 48 16 47.8 1 10 147 53 100 CAJ0933392.1 unnamed protein product [Ranitomeya imitator] diamond 144 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
31272641 31272641 PRJNA1156092_P_NODE_31355_length_242_cov_0.911243_g31225_i0 PRJNA1156092 31355 242 0.911243 2.20520806 Narcine bancroftii 1343680 Chordata Chordata 44.7 0.00566   NR XP_069760398.1 1343680 g31225 i0 52.3 0.545454545454545 44 18 50.8 2 118 240 12 55 XP_069760398.1 uncharacterized protein [Narcine bancroftii] diamond 132 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Torpediniformes Narcinidae Narcine Narcine bancroftii
31355353 31355353 PRJNA1156092_P_NODE_30016_length_243_cov_0.905882_g29886_i0 PRJNA1156092 30016 243 0.905882 2.20129326 Cricetidae 337677 Chordata Chordata 80.9 1.41e-15   NR KAL1784752.1 42415 g29886 i0 60.6 2.46913580246914 66 24 81.5 1 6 203 433 496 KAL1784752.1 zinc finger protein 469 [Sigmodon hispidus] diamond 600 81.6 0.991421568627451 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Sigmodon Sigmodon hispidus
31399281 31399281 PRJNA1156092_P_NODE_21036_length_256_cov_1.557377_g20906_i0 PRJNA1156092 21036 256 1.557377 3.98688512 Ranitomeya imitator 111125 Chordata Chordata 44.7 0.00813   NR CAJ0956274.1 111125 g20906 i0 56.3 1.125 32 14 37.5 0 98 3 1 32 CAJ0956274.1 unnamed protein product [Ranitomeya imitator] diamond 288 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
31608296 31608296 PRJNA1156092_P_NODE_28316_length_245_cov_0.895349_g28186_i0 PRJNA1156092 28316 245 0.895349 2.19360505 Galliformes 8976 Chordata Chordata 78.6 9.21e-15   NR OXB64803.1 9009 g28186 i0 77.6 1.98367346938776 49 8 60 1 165 19 401 446 OXB64803.1 hypothetical protein ASZ78_010396 [Callipepla squamata] diamond 486 78.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Odontophoridae Callipepla Callipepla squamata
31651971 31651971 PRJNA1156092_P_NODE_17677_length_280_cov_0.884058_g17547_i0 PRJNA1156092 17677 280 0.884058 2.4753624 Trichosurus vulpecula 9337 Chordata Chordata 43.5 0.0253   NR XP_036613591.1 9337 g17547 i0 42 0.739285714285714 69 32 73.9 2 48 254 20 80 XP_036613591.1 transmembrane protein 125 [Trichosurus vulpecula] diamond 207 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Phalangeridae Trichosurus Trichosurus vulpecula
32601202 32601202 PRJNA1156092_P_NODE_28380_length_245_cov_0.895349_g28250_i0 PRJNA1156092 28380 245 0.895349 2.19360505 Antechinus flavipes 38775 Chordata Chordata 58.2 1.44e-7   NR XP_051833373.1 38775 g28250 i0 67.6 0.416326530612245 34 11 41.6 0 90 191 886 919 XP_051833373.1 uncharacterized protein LOC127549414 [Antechinus flavipes] diamond 102 58.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Dasyuromorphia Dasyuridae Antechinus Antechinus flavipes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;