RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1156092" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA1156092 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23255180 23255180 PRJNA1156092_P_NODE_31299_length_242_cov_0.911243_g31169_i0 PRJNA1156092 31299 242 0.911243 2.20520806 Bacteria 2 Bacteria Bacteria 163 2.88e-46   NR CAB1080285.1 334747 g31169 i0 95 5.9504132231405 80 4 99.2 0 242 3 330 409 CAB1080285.1 Biotin carboxylase of acetyl-CoA carboxylase (EC [Olavius algarvensis Delta 1 endosymbiont] diamond 1440 163 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius algarvensis Delta 1 endosymbiont
29755871 29755871 PRJNA1156092_P_NODE_27631_length_246_cov_0.890173_g27501_i0 PRJNA1156092 27631 246 0.890173 2.18982558 Olavius algarvensis Delta 1 endosymbiont 334747 Bacteria Bacteria 140 5.469999999999999e-40   NR CAB1079823.1 334747 g27501 i0 86.6 1 82 11 100 0 246 1 30 111 CAB1079823.1 hypothetical protein D1AOALGA4SA_7525 [Olavius algarvensis Delta 1 endosymbiont] diamond 246 140 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius algarvensis Delta 1 endosymbiont
30229886 30229886 PRJNA1156092_P_NODE_25512_length_248_cov_0.880000_g25382_i0 PRJNA1156092 25512 248 0.88 2.1824 Olavius algarvensis associated proteobacterium Delta 3 426688 Bacteria Bacteria 110 3.02e-29   NR CAB5090028.1 426688 g25382 i0 98.1 0.641129032258065 53 1 64.1 0 3 161 72 124 CAB5090028.1 hypothetical protein D3OALGA1CA_846 [Olavius algarvensis associated proteobacterium Delta 3] diamond 159 110 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius algarvensis associated proteobacterium Delta 3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;