RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1151638" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1151638 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14330967 14330967 PRJNA1151638_P_NODE_5072_length_251_cov_0.876404_g5005_i0 PRJNA1151638 5072 251 0.876404 2.19977404 Polyangiaceae bacterium 2268199 Bacteria Bacteria 138 9.63e-37   NR HEU4405987.1 2268199 g5005 i0 80.7 0.99203187250996006 83 16 99.2 0 2 250 33 115 HEU4405987.1 IS4 family transposase [Polyangiaceae bacterium] diamond 249 138 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27198132 27198132 PRJNA1151638_P_NODE_6982_length_234_cov_2.291925_g6915_i0 PRJNA1151638 6982 234 2.291925 5.3631045 Corallococcus sp. AB 1898750 Bacteria Bacteria 109 6.28e-29   NR WP_147470484.1 2316721 g6915 i0 98.1 0.692307692307692 54 1 69.2 0 71 232 1 54 WP_147470484.1 hypothetical protein, partial [Corallococcus sp. AB049A] diamond 162 109 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. AB049A
32569926 32569926 PRJNA1151638_P_NODE_999_length_447_cov_2.382353_g932_i0 PRJNA1151638 999 447 2.382353 10.64911791 Corallococcus sp. AB 1898750 Bacteria Bacteria 124 1.93e-33   NR WP_199747456.1 2316721 g932 i0 100 0.38255033557047 57 0 38.3 0 3 173 71 127 WP_199747456.1 DUF2201 family putative metallopeptidase, partial [Corallococcus sp. AB049A] diamond 171 124 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. AB049A

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;