contig_metadata
4 rows where analysis = "diamond", bioproject = "PRJNA1150539" and tax_phylum = "Nematoda"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30198044 | 30198044 | PRJNA1150539_S_NODE_58512_length_297_cov_0.843750_g57916_i0 | PRJNA1150539 | 58512 | 297 | 0.84375 | 2.5059375 | Gongylonema pulchrum | 637853 | Nematoda | Nematoda | 42.4 | 0.0135 | NR | VDN25472.1 | 637853 | g57916 | i0 | 38.5 | 0.525252525252525 | 52 | 22 | 46.5 | 3 | 122 | 259 | 6 | 53 | VDN25472.1 unnamed protein product [Gongylonema pulchrum] | diamond | 156 | 42.4 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Gongylonematidae | Gongylonema | Gongylonema pulchrum | |
| 31810284 | 31810284 | PRJNA1150539_S_NODE_83077_length_262_cov_1.433862_g82481_i0 | PRJNA1150539 | 83077 | 262 | 1.433862 | 3.75671844 | Aphelenchoides fujianensis | 1052528 | Nematoda | Nematoda | 44.3 | 0.0137 | NR | KAI6216517.1 | 1052528 | g82481 | i0 | 31.6 | 1.08778625954198 | 95 | 49 | 92.7 | 2 | 10 | 252 | 133 | 225 | KAI6216517.1 Neprilysin-1 [Aphelenchoides fujianensis] | diamond | 285 | 44.3 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Aphelenchoididae | Aphelenchoides | Aphelenchoides fujianensis | |
| 32000124 | 32000124 | PRJNA1150539_S_NODE_58978_length_296_cov_1.883408_g58382_i0 | PRJNA1150539 | 58978 | 296 | 1.883408 | 5.57488768 | Trichuris trichiura | 36087 | Nematoda | Nematoda | 62.4 | 8.14e-9 | NR | CDW58151.1 | 36087 | g58382 | i0 | 83.9 | 0.902027027027027 | 31 | 5 | 31.4 | 0 | 3 | 95 | 309 | 339 | CDW58151.1 MH1 and MH2 domain containing protein [Trichuris trichiura] | diamond | 267 | 62.4 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Enoplea | Trichinellida | Trichuridae | Trichuris | Trichuris trichiura | |
| 32538226 | 32538226 | PRJNA1150539_S_NODE_110719_length_219_cov_6.787671_g110123_i0 | PRJNA1150539 | 110719 | 219 | 6.787671 | 14.86499949 | Heterodera trifolii | 157864 | Nematoda | Nematoda | 40.8 | 0.0292 | NR | KAL3099174.1 | 157864 | g110123 | i0 | 37.7 | 0.835616438356164 | 61 | 25 | 76.7 | 2 | 25 | 192 | 31 | 83 | KAL3099174.1 hypothetical protein niasHT_025722 [Heterodera trifolii] | diamond | 183 | 40.8 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Heteroderidae | Heterodera | Heterodera trifolii |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;