RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1150539" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1150539 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27293163 27293163 PRJNA1150539_S_NODE_86363_length_258_cov_1.270270_g85767_i0 PRJNA1150539 86363 258 1.27027 3.2772966 Salinirubellus salinus 1364945 Archaea Archaea 43.5 0.0236   NR WP_260593692.1 1364945 g85767 i0 45.6 0.662790697674419 57 27 61.6 1 67 225 66 122 WP_260593692.1 poly-gamma-glutamate biosynthesis protein PgsC/CapC [Salinirubellus salinus] diamond 171 43.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Salinirubellus Salinirubellus salinus
27924748 27924748 PRJNA1150539_S_NODE_97805_length_245_cov_3.726744_g97209_i0 PRJNA1150539 97805 245 3.726744 9.1305228 Halobacterium sp. CBA1126 2668074 Archaea Archaea 42 0.0327   NR WP_157502138.1 2668074 g97209 i0 41.9 0.52653061224489806 43 24 52.7 1 165 37 77 118 WP_157502138.1 PrsW family glutamic-type intramembrane protease, partial [Halobacterium sp. CBA1126] diamond 129 42 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium sp. CBA1126
31272613 31272613 PRJNA1150539_S_NODE_93995_length_249_cov_1.818182_g93399_i0 PRJNA1150539 93995 249 1.818182 4.52727318 Theionarchaea archaeon 2747605 Archaea Archaea 43.1 0.0245   NR MBU7045767.1 2747605 g93399 i0 30.2 0.759036144578313 63 37 75.9 1 35 223 56 111 MBU7045767.1 hypothetical protein [Theionarchaea archaeon] diamond 189 43.1 1 Archaea   Methanobacteriati Methanobacteriota Theionarchaea       Theionarchaea archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;