RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1150539" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1150539 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27545838 27545838 PRJNA1150539_S_NODE_100444_length_243_cov_1.605882_g99848_i0 PRJNA1150539 100444 243 1.605882 3.90229326 Ridgeia piscesae 27915 Annelida Annelida 47.4 8.4e-4   NR KAK2151757.1 27915 g99848 i0 46.5 1.06172839506173 43 23 53.1 0 153 25 202 244 KAK2151757.1 hypothetical protein NP493_2575g00001 [Ridgeia piscesae] diamond 258 47.4 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Siboglinidae Ridgeia Ridgeia piscesae
30956739 30956739 PRJNA1150539_S_NODE_49834_length_311_cov_3.558824_g49238_i0 PRJNA1150539 49834 311 3.558824 11.06794264 Ridgeia piscesae 27915 Annelida Annelida 49.7 2.72e-4   NR KAK2151757.1 27915 g49238 i0 50 0.463022508038585 48 24 46.3 0 158 301 224 271 KAK2151757.1 hypothetical protein NP493_2575g00001 [Ridgeia piscesae] diamond 144 49.7 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Siboglinidae Ridgeia Ridgeia piscesae
30976093 30976093 PRJNA1150539_S_NODE_93794_length_249_cov_2.732955_g93198_i0 PRJNA1150539 93794 249 2.732955 6.80505795 Metazoa 33208 Annelida Annelida 43.5 0.0224   NR KAK2161642.1 53620 g93198 i0 55.6 1.34939759036145 27 12 32.5 0 234 154 931 957 KAK2161642.1 hypothetical protein LSH36_112g00062 [Paralvinella palmiformis] diamond 336 43.5 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Terebellida Alvinellidae Paralvinella Paralvinella palmiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;