RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1150539" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA1150539 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28682693 28682693 PRJNA1150539_S_NODE_20267_length_381_cov_4.496753_g19671_i0 PRJNA1150539 20267 381 4.496753 17.13262893 Aduncisulcus paluster 2918883 Fornicata other_Eukaryota 44.7 0.0121   NR GKT37427.1 2918883 g19671 i0 58.5 0.905511811023622 41 14 29.9 1 302 189 21 61 GKT37427.1 hypothetical protein ADUPG1_003365, partial [Aduncisulcus paluster] diamond 345 44.7 1 Eukaryota Metamonada   Fornicata       Aduncisulcus Aduncisulcus paluster
32852988 32852988 PRJNA1150539_S_NODE_94820_length_248_cov_2.685714_g94224_i0 PRJNA1150539 94820 248 2.685714 6.66057072 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 42.7 0.0389   NR KAJ5068416.1 1746090 g94224 i0 43.9 0.495967741935484 41 23 49.6 0 95 217 148 188 KAJ5068416.1 pep-cterm sorting domain-containing protein [Anaeramoeba ignava] diamond 123 42.7 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;