RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1150539" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1150539 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27293158 27293158 PRJNA1150539_S_NODE_56523_length_300_cov_1.788546_g55927_i0 PRJNA1150539 56523 300 1.788546 5.365638 Leishmania martiniquensis 1580590 Euglenozoa other_Eukaryota 44.3 0.0212   NR XP_067175545.1 1580590 g55927 i0 31.6 0.79 79 50 75 2 263 39 161 239 XP_067175545.1 hypothetical protein LSCM1_02589 [Leishmania martiniquensis] diamond 237 44.3 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania martiniquensis
27609103 27609103 PRJNA1150539_S_NODE_65864_length_285_cov_4.245283_g65268_i0 PRJNA1150539 65864 285 4.245283 12.09905655 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 45.1 0.00923   NR KAF5220438.1 5693 g65268 i0 52.6 0.4 38 17 40 1 38 151 92 128 KAF5220438.1 hypothetical protein ECC02_006506 [Trypanosoma cruzi] diamond 114 45.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
29882560 29882560 PRJNA1150539_S_NODE_74111_length_274_cov_1.134328_g73515_i0 PRJNA1150539 74111 274 1.134328 3.10805872 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 44.7 0.00606   NR RNC35547.1 5693 g73515 i0 38.6 0.963503649635037 88 48 90.9 2 11 259 78 164 RNC35547.1 retrotransposon hot spot (RHS) protein [Trypanosoma cruzi] diamond 264 44.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;