RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1148190" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1148190 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20162373 20162373 PRJNA1148190_P_NODE_67436_length_684_cov_1.355155_g56372_i0 PRJNA1148190 67436 684 1.355155 9.2692602 root 1 Root_unresolved Root_unresolved 246 8.96e-74   NR AKT93973.1 5778 g56372 i0 56.5 2.81578947368421 216 87 93.9 3 8 649 47 257 AKT93973.1 NADH dehydrogenase subunit 11 [Vermamoeba vermiformis] diamond 1926 246 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29218863 29218863 PRJNA1148190_P_NODE_498869_length_267_cov_1.190722_g487696_i0 PRJNA1148190 498869 267 1.190722 3.17922774 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 111 6.61e-27   NR AKT93936.1 5778 g487696 i0 62.5 2.97752808988764 88 33 98.9 0 3 266 161 248 AKT93936.1 translation elongation factor Tu [Vermamoeba vermiformis] diamond 795 111 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30513744 30513744 PRJNA1148190_P_NODE_583013_length_251_cov_1.207865_g571840_i0 PRJNA1148190 583013 251 1.207865 3.03174115 Amoeba proteus 5775 Tubulinea other_Eukaryota 77 3.44e-14   NR AKN09695.1 5775 g571840 i0 48.8 0.9800796812749 82 27 96.8 2 2 244 152 219 AKN09695.1 Mmm1, partial [Amoeba proteus] diamond 246 77 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;