RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1148190" and tax_phylum = "Nematomorpha"

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tax_superkingdom 1

tax_phylum 1

  • Nematomorpha · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1148190 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26850212 26850212 PRJNA1148190_P_NODE_628981_length_249_cov_0.875000_g617808_i0 PRJNA1148190 628981 249 0.875 2.17875 Gordionus sp. m RMFG-2 3053472 Nematomorpha other_Eukaryota 42.4 0.0214   NR CAK9294610.1 3053472 g617808 i0 69.2 0.313253012048193 26 8 31.3 0 59 136 4 29 CAK9294610.1 unnamed protein product [Gordionus sp. m RMFG-2023] diamond 78 42.4 1 Eukaryota Opisthokonta Metazoa Nematomorpha Gordioida Chordodea Parachordodidae Gordionus Gordionus sp. m RMFG-2023
26913215 26913215 PRJNA1148190_P_NODE_605982_length_250_cov_0.870056_g594809_i0 PRJNA1148190 605982 250 0.870056 2.17514 Gordionus sp. m RMFG-2 3053472 Nematomorpha other_Eukaryota 58.5 1.15e-7   NR XP_065316984.1 3053472 g594809 i0 42.9 2.784 77 42 92.4 2 240 10 1758 1832 XP_065316984.1 myotubularin-related protein 13-like [Gordionus sp. m RMFG-2023] diamond 696 58.5 1 Eukaryota Opisthokonta Metazoa Nematomorpha Gordioida Chordodea Parachordodidae Gordionus Gordionus sp. m RMFG-2023
27735034 27735034 PRJNA1148190_P_NODE_509984_length_265_cov_0.968750_g498811_i0 PRJNA1148190 509984 265 0.96875 2.5671875 Gordionus sp. m RMFG-2 3053472 Nematomorpha other_Eukaryota 43.5 0.0061   NR XP_065318006.1 3053472 g498811 i0 56.7 0.339622641509434 30 13 34 0 2 91 68 97 XP_065318006.1 activated RNA polymerase II transcriptional coactivator p15-like [Gordionus sp. m RMFG-2023] diamond 90 43.5 1 Eukaryota Opisthokonta Metazoa Nematomorpha Gordioida Chordodea Parachordodidae Gordionus Gordionus sp. m RMFG-2023
28018617 28018617 PRJNA1148190_P_NODE_287705_length_325_cov_1.238095_g276534_i0 PRJNA1148190 287705 325 1.238095 4.02380875 Gordionus sp. m RMFG-2 3053472 Nematomorpha other_Eukaryota 44.7 0.0186   NR XP_065320230.1 3053472 g276534 i0 37.3 0.729230769230769 51 28 43.4 1 71 211 37 87 XP_065320230.1 cleavage and polyadenylation specificity factor subunit 4-like isoform X1 [Gordionus sp. m RMFG-2023] diamond 237 44.7 1 Eukaryota Opisthokonta Metazoa Nematomorpha Gordioida Chordodea Parachordodidae Gordionus Gordionus sp. m RMFG-2023
28492740 28492740 PRJNA1148190_P_NODE_605667_length_250_cov_0.870056_g594494_i0 PRJNA1148190 605667 250 0.870056 2.17514 Gordionus sp. m RMFG-2 3053472 Nematomorpha other_Eukaryota 46.2 0.00248   NR CAK9300083.1 3053472 g594494 i0 41.4 3.876 58 31 67.2 2 168 1 547 603 CAK9300083.1 unnamed protein product [Gordionus sp. m RMFG-2023] diamond 969 46.2 1 Eukaryota Opisthokonta Metazoa Nematomorpha Gordioida Chordodea Parachordodidae Gordionus Gordionus sp. m RMFG-2023
30197796 30197796 PRJNA1148190_P_NODE_690772_length_246_cov_0.890173_g679599_i0 PRJNA1148190 690772 246 0.890173 2.18982558 Gordionus sp. m RMFG-2 3053472 Nematomorpha other_Eukaryota 42.7 0.0365   NR XP_065321688.1 3053472 g679599 i0 50 0.439024390243902 36 18 43.9 0 139 32 48 83 XP_065321688.1 CCR4-NOT transcription complex subunit 7-like [Gordionus sp. m RMFG-2023] diamond 108 42.7 1 Eukaryota Opisthokonta Metazoa Nematomorpha Gordioida Chordodea Parachordodidae Gordionus Gordionus sp. m RMFG-2023

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;