RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1148190" and tax_phylum = "Candidatus Lindowiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Lindowiibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1148190 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29186785 29186785 PRJNA1148190_P_NODE_198749_length_377_cov_2.144737_g187579_i0 PRJNA1148190 198749 377 2.144737 8.08565849 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 1817870 Bacteria Bacteria 45.4 0.0138   NR OGH60494.1 1817870 g187579 i0 44.9 1.40848806366048 49 26 38.2 1 376 233 13 61 OGH60494.1 MAG: hypothetical protein A3G34_16345 [Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27] diamond 531 45.4 1 Bacteria Bacteria candidate phyla   Candidatus Lindowiibacteriota         Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27
29333254 29333254 PRJNA1148190_P_NODE_361969_length_296_cov_1.381166_g350796_i0 PRJNA1148190 361969 296 1.381166 4.08825136 Pseudomonadati 3379134 Bacteria Bacteria 90.9 1.85e-19   NR OGH59760.1 1817870 g350796 i0 49.5 4.02364864864865 99 49 99.3 1 295 2 84 182 OGH59760.1 MAG: hypothetical protein A3G34_07995 [Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27] diamond 1191 91.3 0.995618838992333 Bacteria Bacteria candidate phyla   Candidatus Lindowiibacteriota         Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;