RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1148190" and tax_phylum = "Candidatus Gribaldobacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Gribaldobacteria · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1148190 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26849688 26849688 PRJNA1148190_P_NODE_327641_length_309_cov_1.038136_g316468_i0 PRJNA1148190 327641 309 1.038136 3.20784024 bacterium (Candidatus Gribaldobacteria) CG_4_1 2798521 Bacteria Bacteria 75.1 3.59e-13   NR PIZ00993.1 2014266 g316468 i0 55.2 0.650485436893204 67 29 64.1 1 112 309 188 254 PIZ00993.1 MAG: hypothetical protein COY61_01015 [bacterium (Candidatus Gribaldobacteria) CG_4_10_14_0_8_um_filter_33_9] diamond 201 75.1 1 Bacteria Bacteria candidate phyla   Candidatus Gribaldobacteria         bacterium (Candidatus Gribaldobacteria) CG_4_10_14_0_8_um_filter_33_9
29344986 29344986 PRJNA1148190_P_NODE_472529_length_272_cov_1.266332_g461356_i0 PRJNA1148190 472529 272 1.266332 3.44442304 bacterium (Candidatus Gribaldobacteria) CG23_combo_of_CG 2798521 Bacteria Bacteria 102 4.169999999999999e-23   NR PIP32046.1 2014278 g461356 i0 64 1.78676470588235 86 27 90.4 2 27 272 172 257 PIP32046.1 MAG: magnesium chelatase [bacterium (Candidatus Gribaldobacteria) CG23_combo_of_CG06-09_8_20_14_all_37_87_8] diamond 486 102 1 Bacteria Bacteria candidate phyla   Candidatus Gribaldobacteria         bacterium (Candidatus Gribaldobacteria) CG23_combo_of_CG06-09_8_20_14_all_37_87_8

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;