RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1146366" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1146366 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6136527 6136527 PRJNA1146366_S_NODE_365_length_416_cov_10.169096_g362_i0 PRJNA1146366 365 416 10.169096 42.30343936 Ochotona princeps 9978 Chordata Chordata 72.8 3.68e-14   NR XP_058514412.1 9978 g362 i0 74 1.75240384615385 50 13 36.1 0 78 227 3 52 XP_058514412.1 thymosin beta-15A isoform X1 [Ochotona princeps] diamond 729 72.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Ochotonidae Ochotona Ochotona princeps
28764754 28764754 PRJNA1146366_S_NODE_1767_length_271_cov_4.505051_g1764_i0 PRJNA1146366 1767 271 4.505051 12.20868821 root 1 Root_unresolved Root_unresolved 92.4 2.88e-22   NR KAK2531691.1 8932 g1764 i0 97.8 82.859778597786 46 1 50.9 0 266 129 22 67 KAK2531691.1 hypothetical protein Q9966_008500 [Columba livia] diamond 22455 93.2 0.991416309012876 Eukaryota Opisthokonta Metazoa Chordata Aves Columbiformes Columbidae Columba Columba livia
31714117 31714117 PRJNA1146366_S_NODE_1537_length_284_cov_1.981043_g1534_i0 PRJNA1146366 1537 284 1.981043 5.62616212 Ciona intestinalis 7719 Chordata Chordata 60.5 1.33e-9   NR NP_001177191.1 7719 g1534 i0 68.4 0.77112676056338 38 12 40.1 0 284 171 49 86 NP_001177191.1 selenoprotein W, 1 [Ciona intestinalis] diamond 219 60.5 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;