RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1146366" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1146366 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24516208 24516208 PRJNA1146366_S_NODE_1360_length_295_cov_16.072072_g1357_i0 PRJNA1146366 1360 295 16.072072 47.4126124 Metazoa 33208 Arthropoda Arthropoda 98.2 3.519999999999999e-23   NR ERL91937.1 77166 g1357 i0 80 12.2847457627119 55 11 55.9 0 61 225 140 194 ERL91937.1 hypothetical protein D910_09260 [Dendroctonus ponderosae] diamond 3624 98.6 0.995943204868154 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Coleoptera Curculionidae Dendroctonus Dendroctonus ponderosae
26647757 26647757 PRJNA1146366_S_NODE_501_length_387_cov_11.662420_g498_i0 PRJNA1146366 501 387 11.66242 45.1335654 root 1 Root_unresolved Root_unresolved 53.1 4.29e-5   NR GBN61280.1 182803 g498 i0 50.9 4.25581395348837 53 26 41.1 0 262 104 1136 1188 GBN61280.1 putative RNA-directed DNA polymerase from transposon X-element [Araneus ventricosus] diamond 1647 53.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Araneae Araneidae Araneus Araneus ventricosus
32777546 32777546 PRJNA1146366_S_NODE_1340_length_297_cov_1.741071_g1337_i0 PRJNA1146366 1340 297 1.741071 5.17098087 Metazoa 33208 Arthropoda Arthropoda 154 6.19e-45   NR XP_045599629.2 6728 g1337 i0 70.1 4.91919191919192 97 29 98 0 297 7 20 116 XP_045599629.2 glutathione S-transferase Mu 3 isoform X2 [Procambarus clarkii] diamond 1461 154 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Cambaridae Procambarus Procambarus clarkii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;