RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1146029" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1146029 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26943928 26943928 PRJNA1146029_P_NODE_22422_length_236_cov_2.815951_g22141_i0 PRJNA1146029 22422 236 2.815951 6.64564436 Minisyncoccota bacterium 2053589 Bacteria Bacteria 73.2 1.39e-13   NR MDR3548532.1 2053589 g22141 i0 62.3 1.75423728813559 69 18 87.7 2 28 234 1 61 MDR3548532.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 414 73.2 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29849539 29849539 PRJNA1146029_P_NODE_6291_length_352_cov_1.103943_g6013_i0 PRJNA1146029 6291 352 1.103943 3.88587936 Minisyncoccota bacterium 2053589 Bacteria Bacteria 53.5 2.24e-5   NR MFA6094871.1 2053589 g6013 i0 33 1.56818181818182 106 54 89.5 6 35 349 599 688 MFA6094871.1 peptidoglycan-binding protein [Candidatus Paceibacterota bacterium] diamond 552 53.5 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
30670813 30670813 PRJNA1146029_P_NODE_21353_length_242_cov_0.911243_g21072_i0 PRJNA1146029 21353 242 0.911243 2.20520806 Minisyncoccota bacterium 2053589 Bacteria Bacteria 136 4.69e-36   NR MDR3547742.1 2053589 g21072 i0 85 0.991735537190083 80 12 99.2 0 241 2 28 107 MDR3547742.1 DNA methyltransferase [Candidatus Paceibacterota bacterium] diamond 240 136 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;