RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1146029" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1146029 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2840826 2840826 PRJNA1146029_P_NODE_13543_length_268_cov_1.276923_g13262_i0 PRJNA1146029 13543 268 1.276923 3.42215364 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 125 1.84e-33   NR XP_002682096.1 5762 g13262 i0 68.5 2.02611940298507 89 28 99.6 0 268 2 144 232 XP_002682096.1 uncharacterized protein NAEGRDRAFT_30192 [Naegleria gruberi] diamond 543 125 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
16867407 16867407 PRJNA1146029_P_NODE_9734_length_292_cov_2.059361_g9453_i0 PRJNA1146029 9734 292 2.059361 6.01333412 Naegleria 5761 Heterolobosea other_Eukaryota 161 5.5e-47   NR XP_002676073.1 5762 g9453 i0 83.5 1.99315068493151 97 16 99.7 0 291 1 68 164 XP_002676073.1 abc transporter [Naegleria gruberi] diamond 582 161 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
28291077 28291077 PRJNA1146029_P_NODE_11846_length_279_cov_1.422330_g11565_i0 PRJNA1146029 11846 279 1.42233 3.9683007 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 42.4 0.0354   NR XP_044549456.1 51637 g11565 i0 41.5 0.806451612903226 41 24 44.1 0 275 153 96 136 XP_044549456.1 uncharacterized protein C9374_003278 [Naegleria lovaniensis] diamond 225 42.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
29975796 29975796 PRJNA1146029_P_NODE_14031_length_264_cov_1.612565_g13750_i0 PRJNA1146029 14031 264 1.612565 4.2571716 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 67.4 1.02e-10   NR XP_044544450.1 51637 g13750 i0 45.7 1.86363636363636 81 41 89.8 2 245 9 1658 1737 XP_044544450.1 uncharacterized protein C9374_009899 [Naegleria lovaniensis] diamond 492 67.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;