RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1146029" and tax_phylum = "Cossaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Cossaviricota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1146029 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28385905 28385905 PRJNA1146029_P_NODE_2666_length_524_cov_1.305987_g2390_i0 PRJNA1146029 2666 524 1.305987 6.84337188 root 1 Root_unresolved Root_unresolved 167 8.55e-45   NR NP_043127.1 1891767 g2390 i0 56.5 2.49045801526718 147 60 81.9 1 430 2 77 223 NP_043127.1 large T antigen [Betapolyomavirus macacae] diamond 1305 167 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
29659564 29659564 PRJNA1146029_P_NODE_13150_length_270_cov_2.304569_g12869_i0 PRJNA1146029 13150 270 2.304569 6.2223363 Betapolyomavirus macacae 1891767 Viruses Viruses 61.2 1.55e-8   NR AAK29054.1 1891767 g12869 i0 76.2 0.466666666666667 42 10 46.7 0 268 143 496 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 126 61.2 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
30418476 30418476 PRJNA1146029_P_NODE_14353_length_262_cov_1.476190_g14072_i0 PRJNA1146029 14353 262 1.47619 3.8676178 Betapolyomavirus macacae 1891767 Viruses Viruses 58.2 1.74e-7   NR AAK29054.1 1891767 g14072 i0 70.5 0.50381679389313 44 13 50.4 0 244 113 494 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 132 58.2 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
30786162 30786162 PRJNA1146029_P_NODE_21294_length_242_cov_1.390533_g21013_i0 PRJNA1146029 21294 242 1.390533 3.36508986 root 1 Root_unresolved Root_unresolved 122 2.48e-33   NR CAA10165.1 1891767 g21013 i0 73.8 3.95454545454545 80 21 99.2 0 2 241 82 161 CAA10165.1 large tumor antigen [Betapolyomavirus macacae] diamond 957 122 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
31682221 31682221 PRJNA1146029_P_NODE_10437_length_288_cov_0.734884_g10156_i0 PRJNA1146029 10437 288 0.734884 2.11646592 Betapolyomavirus macacae 1891767 Viruses Viruses 59.3 9.18e-8   NR AAK29054.1 1891767 g10156 i0 69 0.4375 42 13 43.8 0 131 256 494 535 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 126 59.3 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;