RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1146029" and tax_kingdom = "Thermoproteati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermoproteati · 4 ✖

bioproject 1

  • PRJNA1146029 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28018255 28018255 PRJNA1146029_P_NODE_8945_length_304_cov_1.333333_g8664_i0 PRJNA1146029 8945 304 1.333333 4.05333232 Thermoproteota archaeon 2056631 Archaea Archaea 81.3 2.24e-15   NR RDJ35597.1 2056631 g8664 i0 41.6 1.99342105263158 101 55 99.7 2 304 2 316 412 RDJ35597.1 MAG: hypothetical protein DWQ19_12330 [Thermoproteota archaeon] diamond 606 81.3 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
29364834 29364834 PRJNA1146029_P_NODE_16509_length_250_cov_1.288136_g16228_i0 PRJNA1146029 16509 250 1.288136 3.22034 root 1 Root_unresolved Root_unresolved 43.1 0.0283   NR MER3601782.1 2026795 g16228 i0 38.8 1.212 67 34 72 1 34 213 1 67 MER3601782.1 hypothetical protein [Nitrososphaerota archaeon] diamond 303 43.1 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
31524447 31524447 PRJNA1146029_P_NODE_6996_length_337_cov_1.003788_g6718_i0 PRJNA1146029 6996 337 1.003788 3.38276556 Nitrosopumilaceae archaeon 2202732 Archaea Archaea 63.5 5.44e-9   NR HWY35805.1 2202732 g6718 i0 54.4 0.507418397626113 57 26 50.7 0 316 146 448 504 HWY35805.1 hypothetical protein [Nitrosopumilaceae archaeon] diamond 171 63.5 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae   Nitrosopumilaceae archaeon
32093684 32093684 PRJNA1146029_P_NODE_15018_length_257_cov_1.673913_g14737_i0 PRJNA1146029 15018 257 1.673913 4.30195641 Sulfolobus sp. E5 2200884 Archaea Archaea 167 1.28e-51   NR TRM73768.1 2200884 g14737 i0 100 0.992217898832685 85 0 99.2 0 3 257 1 85 TRM73768.1 hypothetical protein DJ523_06495 [Sulfolobus sp. E5] diamond 255 167 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus sp. E5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;