RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1145997" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1145997 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5392568 5392568 PRJNA1145997_P_NODE_26845_length_460_cov_16.842377_g24228_i0 PRJNA1145997 26845 460 16.842377 77.4749342 Mus musculus 10090 Chordata Chordata 222 2.88e-72   NR NP_061354.1 10090 g24228 i0 100 0.710869565217391 109 0 71.1 0 81 407 1 109 NP_061354.1 C-X-C motif chemokine 13 precursor [Mus musculus] diamond 327 222 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
7942402 7942402 PRJNA1145997_P_NODE_27087_length_453_cov_4.936842_g24470_i0 PRJNA1145997 27087 453 4.936842 22.36389426 root 1 Root_unresolved Root_unresolved 168 3.63e-45   NR XP_017174599.2 10090 g24470 i0 55.2 2.88079470198675 145 63 96 1 453 19 301 443 XP_017174599.2 agouti-signaling protein isoform X1 [Mus musculus] diamond 1305 169 0.994082840236686 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
23241713 23241713 PRJNA1145997_P_NODE_26839_length_460_cov_55.085271_g24222_i0 PRJNA1145997 26839 460 55.085271 253.3922466 Mus musculus 10090 Chordata Chordata 199 1.46e-63   NR NP_067249.1 10090 g24222 i0 100 1.27826086956522 98 0 63.9 0 379 86 1 98 NP_067249.1 C-X-C motif chemokine 10 precursor [Mus musculus] diamond 588 199 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27880707 27880707 PRJNA1145997_P_NODE_43885_length_250_cov_0.881356_g41266_i0 PRJNA1145997 43885 250 0.881356 2.20339 Chordata 7711 Chordata Chordata 53.9 4.69e-6   NR XP_042324636.1 8520 g41266 i0 37.2 7.476 78 48 93.6 1 235 2 110 186 XP_042324636.1 palmitoyltransferase ZDHHC13 isoform X2 [Sceloporus undulatus] diamond 1869 54.3 0.992633517495396 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Phrynosomatidae Sceloporus Sceloporus undulatus
28397016 28397016 PRJNA1145997_P_NODE_45066_length_248_cov_0.891429_g42447_i0 PRJNA1145997 45066 248 0.891429 2.21074392 Meles meles 9662 Chordata Chordata 43.1 0.0282   NR XP_045870494.1 9662 g42447 i0 38.5 0.629032258064516 52 31 61.7 1 66 218 230 281 XP_045870494.1 uncharacterized protein LOC123948079 [Meles meles] diamond 156 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Meles Meles meles
29438567 29438567 PRJNA1145997_P_NODE_49870_length_236_cov_4.233129_g47251_i0 PRJNA1145997 49870 236 4.233129 9.99018444 Pleurodeles waltl 8319 Chordata Chordata 83.6 1.5e-17   NR KAJ1185330.1 8319 g47251 i0 72.9 0.75 59 12 69.9 1 70 234 107 165 KAJ1185330.1 hypothetical protein NDU88_002123 [Pleurodeles waltl] diamond 177 83.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
31524414 31524414 PRJNA1145997_P_NODE_12536_length_1087_cov_93.951677_g10736_i0 PRJNA1145997 12536 1087 93.951677 1021.25472899 Staurois parvus 386267 Chordata Chordata 51.2 0.00178   NR CAI9550647.1 386267 g10736 i0 51.1 0.416743330266789 47 18 11.6 2 365 490 159 205 CAI9550647.1 unnamed protein product [Staurois parvus] diamond 453 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;