RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1145997" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1145997 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27102083 27102083 PRJNA1145997_P_NODE_34342_length_317_cov_1.709016_g31723_i0 PRJNA1145997 34342 317 1.709016 5.41758072 Helicobacter pylori 210 Bacteria Bacteria 61.6 1e-9   NR GAA6799321.1 210 g31723 i0 100 0.246056782334385 26 0 24.6 0 21 98 1 26 GAA6799321.1 hypothetical protein Kyoto200A_1680 [Helicobacter pylori] diamond 78 61.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27260302 27260302 PRJNA1145997_P_NODE_46103_length_247_cov_0.896552_g43484_i0 PRJNA1145997 46103 247 0.896552 2.21448344 Campylobacter ureolyticus 827 Bacteria Bacteria 76.6 3.92e-14   NR WP_024962140.1 827 g43484 i0 56.3 0.862348178137652 71 31 86.2 0 33 245 335 405 WP_024962140.1 MotA/TolQ/ExbB proton channel family protein [Campylobacter ureolyticus] diamond 213 76.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter ureolyticus
27639425 27639425 PRJNA1145997_P_NODE_44224_length_250_cov_0.881356_g41605_i0 PRJNA1145997 44224 250 0.881356 2.20339 Campylobacter rectus 203 Bacteria Bacteria 85.1 2.07e-18   NR WP_276712189.1 203 g41605 i0 71.2 1.248 52 15 62.4 0 3 158 65 116 WP_276712189.1 tetratricopeptide repeat protein, partial [Campylobacter rectus] diamond 312 85.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus
27659882 27659882 PRJNA1145997_P_NODE_42864_length_252_cov_0.871508_g40245_i0 PRJNA1145997 42864 252 0.871508 2.19620016 Pseudomonadati 3379134 Bacteria Bacteria 148 1.22e-43   NR WP_298104437.1 218934 g40245 i0 94 1.97619047619048 83 5 98.8 0 250 2 5 87 WP_298104437.1 DUF4837 family protein, partial [uncultured Campylobacter sp.] diamond 498 148 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter uncultured Campylobacter sp.
28827789 28827789 PRJNA1145997_P_NODE_48228_length_243_cov_1.494118_g45609_i0 PRJNA1145997 48228 243 1.494118 3.63070674 Bacteria 2 Bacteria Bacteria 120 1.65e-29   NR MBS6285797.1 199 g45609 i0 72.5 11.8518518518519 80 22 98.8 0 2 241 756 835 MBS6285797.1 AAA family ATPase [Campylobacter concisus] diamond 2880 120 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
32820212 32820212 PRJNA1145997_P_NODE_46380_length_246_cov_0.901734_g43761_i0 PRJNA1145997 46380 246 0.901734 2.21826564 Campylobacter curvus 200 Bacteria Bacteria 53.5 5.39e-6   NR WP_169777917.1 200 g43761 i0 43.4 0.646341463414634 53 30 64.6 0 235 77 254 306 WP_169777917.1 Gfo/Idh/MocA family protein [Campylobacter curvus] diamond 159 53.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter curvus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;