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contig_metadata

26 rows where analysis = "diamond", bioproject = "PRJNA1145276" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 26 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1145276 · 26 ✖

analysis 1

  • diamond · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11766872 11766872 PRJNA1145276_P_NODE_11810_length_296_cov_1.035874_g11753_i0 PRJNA1145276 11810 296 1.035874 3.06618704 Cricetulus griseus 10029 Chordata Chordata 81.3 5.35e-18   NR EGV98992.1 10029 g11753 i0 80.4 0.466216216216216 46 9 46.6 0 150 13 18 63 EGV98992.1 hypothetical protein I79_014295 [Cricetulus griseus] diamond 138 81.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
19414642 19414642 PRJNA1145276_P_NODE_9516_length_330_cov_1.832685_g9459_i0 PRJNA1145276 9516 330 1.832685 6.0478605 root 1 Root_unresolved Root_unresolved 143 5.99e-37   NR ERE66291.1 10029 g9459 i0 83.3 1.52727272727273 84 14 76.4 0 254 3 103 186 ERE66291.1 CD177 antigen [Cricetulus griseus] diamond 504 143 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
26595466 26595466 PRJNA1145276_P_NODE_721_length_1080_cov_2.879841_g684_i0 PRJNA1145276 721 1080 2.879841 31.1022828 Cricetulus griseus 10029 Chordata Chordata 304 9.5e-96   NR XP_035306442.1 10029 g684 i0 51 2.54166666666667 306 140 85 2 919 2 59 354 XP_035306442.1 endogenous retrovirus group K member 113 Gag polyprotein isoform X1 [Cricetulus griseus] diamond 2745 304 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
26627374 26627374 PRJNA1145276_P_NODE_16881_length_248_cov_0.880000_g16824_i0 PRJNA1145276 16881 248 0.88 2.1824 Panthera pardus 9691 Chordata Chordata 43.9 0.0149   NR XP_053747462.1 9691 g16824 i0 44.1 0.786290322580645 34 19 41.1 0 97 198 340 373 XP_053747462.1 histone deacetylase 8 isoform X9 [Panthera pardus] diamond 195 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Panthera Panthera pardus
26753712 26753712 PRJNA1145276_P_NODE_3841_length_499_cov_0.938967_g3784_i0 PRJNA1145276 3841 499 0.938967 4.68544533 Mesocricetus auratus 10036 Chordata Chordata 55.8 1.28e-5   NR XP_040587518.1 10036 g3784 i0 36.6 0.559118236472946 93 41 45.1 1 111 335 215 307 XP_040587518.1 LOW QUALITY PROTEIN: olfactory receptor 52H1-like [Mesocricetus auratus] diamond 279 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Mesocricetus Mesocricetus auratus
27102068 27102068 PRJNA1145276_P_NODE_4902_length_447_cov_1.157754_g4845_i0 PRJNA1145276 4902 447 1.157754 5.17516038 Mus musculus 10090 Chordata Chordata 57 6.89e-7   NR EDL08153.1 10090 g4845 i0 63.4 0.550335570469799 41 14 26.8 1 121 2 32 72 EDL08153.1 mCG1030119 [Mus musculus] diamond 246 57 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27133395 27133395 PRJNA1145276_P_NODE_14922_length_260_cov_0.823529_g14865_i0 PRJNA1145276 14922 260 0.823529 2.1411754 Sigmodon hispidus 42415 Chordata Chordata 85.1 1.57e-18   NR KAL1770787.1 42415 g14865 i0 64.2 0.611538461538462 53 19 61.2 0 164 6 49 101 KAL1770787.1 protease, partial [Sigmodon hispidus] diamond 159 85.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Sigmodon Sigmodon hispidus
27544534 27544534 PRJNA1145276_P_NODE_14904_length_260_cov_1.235294_g14847_i0 PRJNA1145276 14904 260 1.235294 3.2117644 Mesocricetus auratus 10036 Chordata Chordata 166 4.73e-46   NR XP_040610490.1 10036 g14847 i0 82.6 0.992307692307692 86 15 99.2 0 3 260 397 482 XP_040610490.1 MLV-related proviral Env polyprotein-like [Mesocricetus auratus] diamond 258 166 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Mesocricetus Mesocricetus auratus
27702689 27702689 PRJNA1145276_P_NODE_18704_length_243_cov_0.905882_g18647_i0 PRJNA1145276 18704 243 0.905882 2.20129326 Mirounga leonina 9715 Chordata Chordata 60.1 2.98e-8   NR KAF3830573.1 9715 g18647 i0 73.7 2.2962962962963 38 10 46.9 0 213 100 147 184 KAF3830573.1 hypothetical protein GH733_004392 [Mirounga leonina] diamond 558 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Phocidae Mirounga Mirounga leonina
28018218 28018218 PRJNA1145276_P_NODE_4825_length_450_cov_1.222812_g4768_i0 PRJNA1145276 4825 450 1.222812 5.502654 Suncus etruscus 109475 Chordata Chordata 58.9 7.4e-7   NR XP_049645818.1 109475 g4768 i0 61.5 0.346666666666667 52 20 34.7 0 84 239 165 216 XP_049645818.1 endogenous retrovirus group K member 6 Gag polyprotein-like [Suncus etruscus] diamond 156 58.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Suncus Suncus etruscus
28649702 28649702 PRJNA1145276_P_NODE_19327_length_241_cov_1.821429_g19270_i0 PRJNA1145276 19327 241 1.821429 4.38964389 Apodemus sylvaticus 10129 Chordata Chordata 43.5 0.0195   NR XP_052026244.1 10129 g19270 i0 64.9 0.460580912863071 37 9 41.1 1 108 10 148 184 XP_052026244.1 igE-binding protein-like [Apodemus sylvaticus] diamond 111 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus sylvaticus
28901986 28901986 PRJNA1145276_P_NODE_18348_length_244_cov_0.900585_g18291_i0 PRJNA1145276 18348 244 0.900585 2.1974274 Phocoena sinus 42100 Chordata Chordata 72.8 3.62e-14   NR XP_032469154.1 42100 g18291 i0 75.6 37.6475409836066 45 11 55.3 0 49 183 66 110 XP_032469154.1 peptidyl-prolyl cis-trans isomerase E-like [Phocoena sinus] diamond 9186 72.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Phocoenidae Phocoena Phocoena sinus
29218112 29218112 PRJNA1145276_P_NODE_15709_length_251_cov_0.865169_g15652_i0 PRJNA1145276 15709 251 0.865169 2.17157419 Phodopus roborovskii 109678 Chordata Chordata 46.2 0.00246   NR CAH6780257.1 109678 g15652 i0 44.6 1.32669322709163 56 22 61 2 53 205 8 59 CAH6780257.1 Trpc5 [Phodopus roborovskii] diamond 333 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Phodopus Phodopus roborovskii
29375770 29375770 PRJNA1145276_P_NODE_5489_length_425_cov_1.306818_g5432_i0 PRJNA1145276 5489 425 1.306818 5.5539765 Mus musculus 10090 Chordata Chordata 123 2.11e-29   NR AXP11718.1 10090 g5432 i0 52.8 4.32 123 58 86.8 0 6 374 373 495 AXP11718.1 putative gag-pol protein [Mus musculus] diamond 1836 123 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
29817677 29817677 PRJNA1145276_P_NODE_6151_length_403_cov_1.166667_g6094_i0 PRJNA1145276 6151 403 1.166667 4.70166801 Rattus norvegicus 10116 Chordata Chordata 153 2.9299999999999996e-42   NR pir|JC7527| 10116 g6094 i0 53.4 1.95037220843672 131 61 97.5 0 401 9 201 331 pir|JC7527| nuclear retroviral polymerase-like protein - rat [Rattus norvegicus] diamond 786 153 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
29849504 29849504 PRJNA1145276_P_NODE_15291_length_255_cov_1.269231_g15234_i0 PRJNA1145276 15291 255 1.269231 3.23653905 Rattus norvegicus 10116 Chordata Chordata 46.2 1.76e-4   NR EDM06249.1 10116 g15234 i0 69.7 0.388235294117647 33 8 36.5 1 96 188 24 56 EDM06249.1 rCG35309 [Rattus norvegicus] diamond 99 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
30133398 30133398 PRJNA1145276_P_NODE_13632_length_274_cov_1.915423_g13575_i0 PRJNA1145276 13632 274 1.915423 5.24825902 Suncus etruscus 109475 Chordata Chordata 150 4.04e-40   NR XP_049636651.1 109475 g13575 i0 72.5 0.996350364963504 91 25 99.6 0 1 273 364 454 XP_049636651.1 MLV-related proviral Env polyprotein-like [Suncus etruscus] diamond 273 150 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Suncus Suncus etruscus
30449937 30449937 PRJNA1145276_P_NODE_11333_length_302_cov_1.606987_g11276_i0 PRJNA1145276 11333 302 1.606987 4.85310074 Cricetulus griseus 10029 Chordata Chordata 112 1.39e-27   NR ERE68429.1 10029 g11276 i0 49 3.9635761589404 100 51 99.3 0 2 301 161 260 ERE68429.1 putative Gag polyprotein [Cricetulus griseus] diamond 1197 112 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
30722862 30722862 PRJNA1145276_P_NODE_19314_length_242_cov_0.863905_g19257_i0 PRJNA1145276 19314 242 0.863905 2.0906501 Chordata 7711 Chordata Chordata 67 9.89e-11   NR VCW67208.1 48420 g19257 i0 75 23.1694214876033 40 10 49.6 0 112 231 23 62 VCW67208.1 unnamed protein product, partial [Gulo gulo] diamond 5607 67.4 0.99406528189911 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Gulo Gulo gulo
31239489 31239489 PRJNA1145276_P_NODE_16775_length_248_cov_0.880000_g16718_i0 PRJNA1145276 16775 248 0.88 2.1824 Microtus ochrogaster 79684 Chordata Chordata 60.8 1.62e-8   NR KAH0517223.1 79684 g16718 i0 75 0.483870967741935 40 10 48.4 0 148 29 1 40 KAH0517223.1 Dual specificity protein phosphatase 26 [Microtus ochrogaster] diamond 120 60.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Microtus Microtus ochrogaster
31461248 31461248 PRJNA1145276_P_NODE_16876_length_248_cov_0.880000_g16819_i0 PRJNA1145276 16876 248 0.88 2.1824 Nannospalax galili 1026970 Chordata Chordata 112 1.18e-26   NR XP_029409942.1 1026970 g16819 i0 65.1 1.00403225806452 83 28 99.2 1 247 2 75 157 XP_029409942.1 uncharacterized protein LOC115066968 [Nannospalax galili] diamond 249 112 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Spalacidae Nannospalax Nannospalax galili
31808961 31808961 PRJNA1145276_P_NODE_9157_length_336_cov_1.536122_g9100_i0 PRJNA1145276 9157 336 1.536122 5.16136992 Suncus etruscus 109475 Chordata Chordata 90.9 1.38e-18   NR XP_049628622.1 109475 g9100 i0 68.4 2.49107142857143 57 18 50.9 0 164 334 1 57 XP_049628622.1 endogenous retrovirus group K member 10 Gag polyprotein-like [Suncus etruscus] diamond 837 90.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Suncus Suncus etruscus
32505215 32505215 PRJNA1145276_P_NODE_13779_length_273_cov_1.150000_g13722_i0 PRJNA1145276 13779 273 1.15 3.1395 Microtus oregoni 111838 Chordata Chordata 65.9 3.76e-10   NR XP_041504608.1 111838 g13722 i0 47.8 1.01098901098901 92 35 98.9 3 271 2 67 147 XP_041504608.1 endogenous retrovirus group K member 10 Gag polyprotein-like [Microtus oregoni] diamond 276 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Microtus Microtus oregoni
32631062 32631062 PRJNA1145276_P_NODE_6540_length_392_cov_1.206897_g6483_i0 PRJNA1145276 6540 392 1.206897 4.73103624 Alexandromys fortis 100897 Chordata Chordata 222 2.47e-67   NR XP_049988519.1 100897 g6483 i0 78.5 0.994897959183674 130 28 99.5 0 390 1 291 420 XP_049988519.1 igE-binding protein-like [Alexandromys fortis] diamond 390 222 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Alexandromys Alexandromys fortis
32746251 32746251 PRJNA1145276_P_NODE_1260_length_838_cov_1.439216_g1213_i0 PRJNA1145276 1260 838 1.439216 12.06063008 Mammalia 40674 Chordata Chordata 399 8.799999999999999e-127   NR MBZ3886481.1 30640 g1213 i0 99 38.1551312649165 201 2 72 0 3 605 423 623 MBZ3886481.1 Nuclear factor NF-kappa-B p105 subunit [Sciurus carolinensis] diamond 31974 403 0.990074441687345 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Sciurus Sciurus carolinensis
32777538 32777538 PRJNA1145276_P_NODE_14840_length_261_cov_1.095745_g14783_i0 PRJNA1145276 14840 261 1.095745 2.85989445 Aves 8782 Chordata Chordata 49.7 1.68e-4   NR PKK33602.1 8932 g14783 i0 67.6 4.03448275862069 34 11 39.1 0 104 205 193 226 PKK33602.1 endogenous retrovirus group K member 18 Pol protein-like [Columba livia] diamond 1053 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Columbiformes Columbidae Columba Columba livia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;