RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1145276" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1145276 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27070516 27070516 PRJNA1145276_P_NODE_17222_length_247_cov_0.885057_g17165_i0 PRJNA1145276 17222 247 0.885057 2.18609079 Cutibacterium acnes HL 1747 Bacteria Bacteria 45.4 2.24e-4   NR EFT59931.1 765074 g17165 i0 43.6 0.473684210526316 39 22 47.4 0 140 24 1 39 EFT59931.1 hypothetical protein HMPREF9572_01614 [Cutibacterium acnes HL072PA1] diamond 117 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
27923370 27923370 PRJNA1145276_P_NODE_6905_length_383_cov_0.770968_g6848_i0 PRJNA1145276 6905 383 0.770968 2.95280744 Mycobacterium tuberculosis 1773 Bacteria Bacteria 45.8 0.0114   NR CLA46635.1 1773 g6848 i0 93.6 0.736292428198433 47 3 36.8 0 187 47 113 159 CLA46635.1 Uncharacterised protein [Mycobacterium tuberculosis] diamond 282 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis
29849505 29849505 PRJNA1145276_P_NODE_3191_length_544_cov_1.632696_g3134_i0 PRJNA1145276 3191 544 1.632696 8.88186624 Streptomyces aureoverticillatus 66871 Bacteria Bacteria 152 8.67e-45   NR GGS30451.1 66871 g3134 i0 98.7 0.435661764705882 79 1 43.6 0 226 462 1 79 GGS30451.1 hypothetical protein GCM10010252_78320 [Streptomyces aureoverticillatus] diamond 237 152 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces aureoverticillatus
31113000 31113000 PRJNA1145276_P_NODE_11915_length_295_cov_0.855856_g11858_i0 PRJNA1145276 11915 295 0.855856 2.5247752 Streptomyces sp. AS 1931 Bacteria Bacteria 59.3 2.3e-9   NR WP_250093409.1 2938946 g11858 i0 50 0.569491525423729 56 28 56.9 0 247 80 7 62 WP_250093409.1 hypothetical protein, partial [Streptomyces sp. AS02] diamond 168 59.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. AS02
31113003 31113003 PRJNA1145276_P_NODE_6575_length_391_cov_1.210692_g6518_i0 PRJNA1145276 6575 391 1.210692 4.73380572 Streptomyces sp. B93 2824875 Bacteria Bacteria 46.2 0.00958   NR WP_210924484.1 2824875 g6518 i0 35.2 0.544757033248082 71 45 53.7 1 242 33 238 308 WP_210924484.1 LLM class flavin-dependent oxidoreductase [Streptomyces sp. B93] diamond 213 46.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. B93
31903792 31903792 PRJNA1145276_P_NODE_4597_length_458_cov_2.779221_g4540_i0 PRJNA1145276 4597 458 2.779221 12.72883218 Mycobacterium angelicum 470074 Bacteria Bacteria 65.9 6.24e-11   NR WP_211281424.1 470074 g4540 i0 61.5 0.799126637554585 52 20 34.1 0 254 409 20 71 WP_211281424.1 hypothetical protein, partial [Mycobacterium angelicum] diamond 366 65.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium angelicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;