RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1144090" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1144090 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26912225 26912225 PRJNA1144090_P_NODE_71682_length_298_cov_3.368889_g71147_i0 PRJNA1144090 71682 298 3.368889 10.03928922 Mycoplasmopsis canis 29555 Bacteria Bacteria 73.9 3.68e-13   NR WP_004794920.1 29555 g71147 i0 47.5 2.43624161073825 80 42 80.5 0 295 56 26 105 WP_004794920.1 translation elongation factor Ts [Mycoplasmopsis canis] diamond 726 73.9 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis canis
27975407 27975407 PRJNA1144090_P_NODE_21705_length_580_cov_2.236686_g21180_i0 PRJNA1144090 21705 580 2.236686 12.9727788 Bacteria 2 Bacteria Bacteria 53.1 1.5e-4   NR WP_041784289.1 59748 g21180 i0 28.9 5.43620689655172 173 93 84.8 5 61 552 3 154 WP_041784289.1 RluA family pseudouridine synthase [Candidatus Phytoplasma australiense] diamond 3153 53.5 0.992523364485981 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australiense
28775780 28775780 PRJNA1144090_P_NODE_73027_length_296_cov_1.300448_g72492_i0 PRJNA1144090 73027 296 1.300448 3.84932608 Haloplasmataceae bacterium 2862752 Bacteria Bacteria 44.3 0.0193   NR HEY8364506.1 2862752 g72492 i0 30.2 0.871621621621622 86 56 86.1 3 265 11 62 144 HEY8364506.1 tetratricopeptide repeat protein [Haloplasmataceae bacterium] diamond 258 44.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Haloplasmatales Haloplasmataceae   Haloplasmataceae bacterium
30133380 30133380 PRJNA1144090_P_NODE_89872_length_265_cov_1.250000_g89337_i0 PRJNA1144090 89872 265 1.25 3.3125 Candidatus Moeniiplasma glomeromycotorum 1822367 Bacteria Bacteria 80.1 3.5e-15   NR MCE8162849.1 1822367 g89337 i0 44.8 2.93207547169811 87 47 97.4 1 261 4 385 471 MCE8162849.1 protein kinase [Candidatus Moeniiplasma glomeromycotorum] diamond 777 80.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Candidatus Moeniiplasma Candidatus Moeniiplasma glomeromycotorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;