RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1144090" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1144090 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28933725 28933725 PRJNA1144090_P_NODE_119448_length_230_cov_4.987261_g118913_i0 PRJNA1144090 119448 230 4.987261 11.4707003 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 53.1 6.7e-6   NR MES1912797.1 1215613 g118913 i0 36.2 1.72173913043478 69 43 90 1 20 226 505 572 MES1912797.1 hypothetical protein [Cercozoa sp. M6MM] diamond 396 53.1 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
29312568 29312568 PRJNA1144090_P_NODE_19649_length_614_cov_1.946396_g19125_i0 PRJNA1144090 19649 614 1.946396 11.95087144 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 118 4.28e-29   NR MES1908571.1 1215613 g19125 i0 39.2 0.947882736156352 194 100 94.8 3 583 2 8 183 MES1908571.1 hypothetical protein [Cercozoa sp. M6MM] diamond 582 118 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
30892142 30892142 PRJNA1144090_P_NODE_52914_length_350_cov_1.935018_g52379_i0 PRJNA1144090 52914 350 1.935018 6.772563 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 53.1 1.94e-5   NR MES1913935.1 1215613 g52379 i0 62.7 0.437142857142857 51 18 43.7 1 350 198 162 211 MES1913935.1 hypothetical protein [Cercozoa sp. M6MM] diamond 153 53.1 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
32093614 32093614 PRJNA1144090_P_NODE_56678_length_337_cov_2.693182_g56143_i0 PRJNA1144090 56678 337 2.693182 9.07602334 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 70.5 6.84e-12   NR MES1910874.1 1215613 g56143 i0 42.6 5.93768545994065 94 36 80.1 3 66 335 129 208 MES1910874.1 hypothetical protein [Cercozoa sp. M6MM] diamond 2001 70.5 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;