RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1144090" and tax_phylum = "Candidatus Rokuibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Rokuibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1144090 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6664808 6664808 PRJNA1144090_P_NODE_110206_length_244_cov_1.801170_g109671_i0 PRJNA1144090 110206 244 1.80117 4.3948548 Pseudomonadati 3379134 Bacteria Bacteria 113 1.14e-27   NR OGK83064.1 1802095 g109671 i0 67.5 5.96311475409836 80 26 98.4 0 244 5 39 118 OGK83064.1 MAG: diaminopropionate ammonia-lyase [Candidatus Rokubacteria bacterium GWA2_70_23] diamond 1455 113 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokubacteria bacterium GWA2_70_23
27228436 27228436 PRJNA1144090_P_NODE_39743_length_409_cov_2.904762_g39208_i0 PRJNA1144090 39743 409 2.904762 11.88047658 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 106 1.0699999999999997e-23   NR PWU23543.1 2053607 g39208 i0 44.7 0.968215158924205 132 49 96.8 4 6 401 1543 1650 PWU23543.1 MAG: hypothetical protein C5B48_08445 [Candidatus Rokuibacteriota bacterium] diamond 396 106 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
28554993 28554993 PRJNA1144090_P_NODE_62827_length_320_cov_1.651822_g62292_i0 PRJNA1144090 62827 320 1.651822 5.2858304 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 67.8 7.94e-11   NR MBI2204128.1 2053607 g62292 i0 47.9 0.665625 71 33 65.6 2 215 6 118 185 MBI2204128.1 phosphatidate cytidylyltransferase [Candidatus Rokuibacteriota bacterium] diamond 213 67.8 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;