RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1144090" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1144090 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28618157 28618157 PRJNA1144090_P_NODE_96147_length_255_cov_1.818681_g95612_i0 PRJNA1144090 96147 255 1.818681 4.63763655 Armatimonadota bacterium 2033014 Bacteria Bacteria 61.2 1.14e-8   NR MDQ2799187.1 2033014 g95612 i0 52.8 0.623529411764706 53 25 62.4 0 2 160 284 336 MDQ2799187.1 catalase family protein [Armatimonadota bacterium] diamond 159 61.2 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30217352 30217352 PRJNA1144090_P_NODE_41212_length_401_cov_2.996951_g40677_i0 PRJNA1144090 41212 401 2.996951 12.01777351 Bacillati 1783272 Bacteria Bacteria 103 5.96e-24   NR WP_075166322.1 454171 g40677 i0 43.6 3.45635910224439 117 54 87.5 3 2 352 150 254 WP_075166322.1 phytanoyl-CoA dioxygenase family protein [Chthonomonas calidirosea] diamond 1386 104 0.990384615384615 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea
30260338 30260338 PRJNA1144090_P_NODE_69732_length_303_cov_1.339130_g69197_i0 PRJNA1144090 69732 303 1.33913 4.0575639 Armatimonadota bacterium 2033014 Bacteria Bacteria 47 0.00233   NR MFO7947918.1 2033014 g69197 i0 30.8 0.900990099009901 91 55 83.2 2 265 14 363 452 MFO7947918.1 sugar transferase [Armatimonadota bacterium] diamond 273 47 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30481256 30481256 PRJNA1144090_P_NODE_29493_length_485_cov_2.966019_g28959_i0 PRJNA1144090 29493 485 2.966019 14.38519215 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 50.4 8.85e-4   NR MCX7798822.1 2682145 g28959 i0 28.8 1.89278350515464 160 90 97.7 7 4 477 48 185 MCX7798822.1 hypothetical protein [Fimbriimonadales bacterium] diamond 918 50.4 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;