RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1143173" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1143173 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28838812 28838812 PRJNA1143173_P_NODE_35208_length_243_cov_1.788235_g35182_i0 PRJNA1143173 35208 243 1.788235 4.34541105 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 95.1 1.43e-20   NR WP_299075832.1 1678694 g35182 i0 63 0.901234567901235 73 27 90.1 0 219 1 458 530 WP_299075832.1 hypothetical protein [uncultured Fretibacterium sp.] diamond 219 95.1 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
29312528 29312528 PRJNA1143173_P_NODE_29129_length_260_cov_4.454545_g29103_i0 PRJNA1143173 29129 260 4.454545 11.581817 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 133 3.219999999999999e-38   NR WP_299081011.1 1678694 g29103 i0 97.1 0.796153846153846 69 2 79.6 0 52 258 1 69 WP_299081011.1 DUF134 domain-containing protein [uncultured Fretibacterium sp.] diamond 207 133 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;