RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1143173" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA1143173 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27670838 27670838 PRJNA1143173_P_NODE_13324_length_299_cov_7.393805_g13298_i0 PRJNA1143173 13324 299 7.393805 22.10747695 Halorubrum laminariae 1433523 Archaea Archaea 60.1 6.02e-8   NR WP_256418622.1 1433523 g13298 i0 47.4 1.9866220735786 57 30 57.2 0 129 299 845 901 WP_256418622.1 Eco57I restriction-modification methylase domain-containing protein [Halorubrum laminariae] diamond 594 60.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum laminariae
31334242 31334242 PRJNA1143173_P_NODE_18776_length_290_cov_7.645161_g18750_i0 PRJNA1143173 18776 290 7.645161 22.1709669 Halococcus sp. 29286 Archaea Archaea 153 3.28e-42   NR HET7323393.1 29286 g18750 i0 79.2 0.993103448275862 96 20 99.3 0 290 3 67 162 HET7323393.1 DHH family phosphoesterase [Halococcus sp.] diamond 288 153 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus sp.
31840300 31840300 PRJNA1143173_P_NODE_8277_length_310_cov_7.029536_g8251_i0 PRJNA1143173 8277 310 7.029536 21.7915616 Methanothrix sp. 90426 Archaea Archaea 57.8 3.76e-7   NR MDD1761047.1 90426 g8251 i0 57.1 0.919354838709677 49 20 46.5 1 162 305 58 106 MDD1761047.1 hypothetical protein [Methanothrix sp.] diamond 285 57.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;