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contig_metadata

10 rows where analysis = "diamond", bioproject = "PRJNA1139127" and tax_phylum = "Fusobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Fusobacteriota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1139127 · 10 ✖

analysis 1

  • diamond · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9213117 9213117 PRJNA1139127_P_NODE_28428_length_332_cov_1.891892_g27936_i0 PRJNA1139127 28428 332 1.891892 6.28108144 Fusobacterium massiliense 1852365 Bacteria Bacteria 202 2.1100000000000007e-59   NR WP_074016114.1 1852365 g27936 i0 99 0.939759036144578 104 1 94 0 21 332 114 217 WP_074016114.1 PTS fructose transporter subunit IIABC [Fusobacterium massiliense] diamond 312 202 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium massiliense
10488565 10488565 PRJNA1139127_P_NODE_18829_length_443_cov_2.359459_g18338_i0 PRJNA1139127 18829 443 2.359459 10.45240337 Fusobacterium massiliense 1852365 Bacteria Bacteria 286 1.72e-93   NR WP_074016969.1 1852365 g18338 i0 99.3 0.99548532731377 147 1 99.5 0 443 3 248 394 WP_074016969.1 transcription termination factor Rho [Fusobacterium massiliense] diamond 441 286 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium massiliense
14314031 14314031 PRJNA1139127_P_NODE_25932_length_354_cov_1.103203_g25440_i0 PRJNA1139127 25932 354 1.103203 3.90533862 Fusobacterium massiliense 1852365 Bacteria Bacteria 229 1.7299999999999998e-69   NR WP_074017148.1 1852365 g25440 i0 100 1 118 0 100 0 354 1 236 353 WP_074017148.1 DNA mismatch repair endonuclease MutL [Fusobacterium massiliense] diamond 354 229 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium massiliense
24510990 24510990 PRJNA1139127_P_NODE_23500_length_380_cov_1.485342_g23009_i0 PRJNA1139127 23500 380 1.485342 5.6442996 Fusobacterium massiliense 1852365 Bacteria Bacteria 217 5.98e-68   NR WP_074016141.1 1852365 g23009 i0 100 0.884210526315789 112 0 88.4 0 359 24 211 322 WP_074016141.1 6-phosphofructokinase [Fusobacterium massiliense] diamond 336 217 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium massiliense
29344147 29344147 PRJNA1139127_P_NODE_21549_length_403_cov_1.354545_g21058_i0 PRJNA1139127 21549 403 1.354545 5.45881635 Fusobacterium massiliense 1852365 Bacteria Bacteria 198 4.07e-62   NR WP_074016298.1 1852365 g21058 i0 100 0.722084367245658 97 0 72.2 0 293 3 1 97 WP_074016298.1 transcription termination/antitermination protein NusG [Fusobacterium massiliense] diamond 291 198 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium massiliense
29722663 29722663 PRJNA1139127_P_NODE_46690_length_245_cov_1.354651_g46197_i0 PRJNA1139127 46690 245 1.354651 3.31889495 Fusobacterium massiliense 1852365 Bacteria Bacteria 160 3.33e-44   NR WP_074016279.1 1852365 g46197 i0 100 0.991836734693878 81 0 99.2 0 2 244 411 491 WP_074016279.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase [Fusobacterium massiliense] diamond 243 160 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium massiliense
29912623 29912623 PRJNA1139127_P_NODE_31131_length_312_cov_1.301255_g30638_i0 PRJNA1139127 31131 312 1.301255 4.0599156 Fusobacterium massiliense 1852365 Bacteria Bacteria 196 1.39e-61   NR WP_074015871.1 1852365 g30638 i0 97.1 0.990384615384615 103 3 99 0 311 3 38 140 WP_074015871.1 septum site-determining protein MinC [Fusobacterium massiliense] diamond 309 196 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium massiliense
30291983 30291983 PRJNA1139127_P_NODE_29272_length_326_cov_0.916996_g28780_i0 PRJNA1139127 29272 326 0.916996 2.98940696 Fusobacterium massiliense 1852365 Bacteria Bacteria 177 1.43e-50   NR WP_074016806.1 1852365 g28780 i0 98.8 0.791411042944785 86 1 79.1 0 1 258 470 555 WP_074016806.1 single-stranded-DNA-specific exonuclease RecJ [Fusobacterium massiliense] diamond 258 177 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium massiliense
30449792 30449792 PRJNA1139127_P_NODE_31993_length_306_cov_1.339056_g31500_i0 PRJNA1139127 31993 306 1.339056 4.09751136 Fusobacterium massiliense 1852365 Bacteria Bacteria 189 2.13e-54   NR WP_074016493.1 1852365 g31500 i0 100 0.990196078431373 101 0 99 0 304 2 372 472 WP_074016493.1 YadA C-terminal domain-containing protein [Fusobacterium massiliense] diamond 303 189 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium massiliense
31987560 31987560 PRJNA1139127_P_NODE_45638_length_247_cov_0.890805_g45145_i0 PRJNA1139127 45638 247 0.890805 2.20028835 Streptobacillus 34104 Bacteria Bacteria 118 3.1000000000000003e-30   NR WP_073508074.1 1712031 g45145 i0 72 1.9919028340081 82 23 99.6 0 247 2 130 211 WP_073508074.1 metal ABC transporter solute-binding protein, Zn/Mn family [Streptobacillus notomytis] diamond 492 118 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus notomytis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;