RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1139127" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 5 ✖

bioproject 1

  • PRJNA1139127 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14314204 14314204 PRJNA1139127_P_NODE_41972_length_253_cov_0.866667_g41479_i0 PRJNA1139127 41972 253 0.866667 2.19266751 Halalkalicoccus sp. 1973143 Archaea Archaea 160 1.6e-48   NR MEM4780322.1 1973143 g41479 i0 88.1 1.99209486166008 84 10 99.6 0 1 252 32 115 MEM4780322.1 FAD-binding domain-containing protein [Halalkalicoccus sp.] diamond 504 160 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus sp.
29186404 29186404 PRJNA1139127_P_NODE_46249_length_246_cov_0.901734_g45756_i0 PRJNA1139127 46249 246 0.901734 2.21826564 Natronorubrum daqingense 588898 Archaea Archaea 145 1.22e-39   NR WP_139327087.1 588898 g45756 i0 90.2 1 82 8 100 0 246 1 157 238 WP_139327087.1 polysaccharide deacetylase family protein [Natronorubrum daqingense] diamond 246 145 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum daqingense
30765503 30765503 PRJNA1139127_P_NODE_35234_length_286_cov_1.093897_g34741_i0 PRJNA1139127 35234 286 1.093897 3.12854542 Halalkalicoccus sp. 1973143 Archaea Archaea 163 3.6599999999999996e-46   NR MEM4780603.1 1973143 g34741 i0 80.6 0.975524475524476 93 18 97.6 0 2 280 67 159 MEM4780603.1 amidohydrolase [Halalkalicoccus sp.] diamond 279 163 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus sp.
31207373 31207373 PRJNA1139127_P_NODE_47555_length_244_cov_0.912281_g47062_i0 PRJNA1139127 47555 244 0.912281 2.22596564 Halalkalicoccus jeotgali 413810 Archaea Archaea 112 1.18e-26   NR WP_008414681.1 413810 g47062 i0 64.2 0.995901639344262 81 29 99.6 0 1 243 866 946 WP_008414681.1 hypothetical protein [Halalkalicoccus jeotgali] diamond 243 112 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
32050917 32050917 PRJNA1139127_P_NODE_49038_length_242_cov_0.923077_g48545_i0 PRJNA1139127 49038 242 0.923077 2.23384634 Saliphagus 2039236 Archaea Archaea 121 8.92e-30   NR WP_224829048.1 1849069 g48545 i0 73.8 1.98347107438017 80 21 99.2 0 3 242 980 1059 WP_224829048.1 VirB4 family type IV secretion system protein [Saliphagus infecundisoli] diamond 480 121 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Saliphagus Saliphagus infecundisoli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;