RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1139127" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1139127 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24511059 24511059 PRJNA1139127_P_NODE_30700_length_315_cov_1.285124_g30208_i0 PRJNA1139127 30700 315 1.285124 4.0481406 Durusdinium trenchii 1381693 SAR_Eukaryotes SAR_Eukaryotes 122 5.26e-33   NR CAK9114403.1 1381693 g30208 i0 63.5 3.54285714285714 96 33 89.5 1 282 1 6 101 CAK9114403.1 40S ribosomal protein S11-2 [Durusdinium trenchii] diamond 1116 122 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Durusdinium Durusdinium trenchii
26658643 26658643 PRJNA1139127_P_NODE_36001_length_282_cov_1.110048_g35508_i0 PRJNA1139127 36001 282 1.110048 3.13033536 Pseudo-nitzschia multistriata 183589 SAR_Eukaryotes SAR_Eukaryotes 52.8 1.87e-5   NR VEU37424.1 183589 g35508 i0 56.3 0.51063829787234 48 17 51.1 1 1 144 1227 1270 VEU37424.1 unnamed protein product [Pseudo-nitzschia multistriata] diamond 144 52.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata
30228292 30228292 PRJNA1139127_P_NODE_37372_length_274_cov_2.776119_g36879_i0 PRJNA1139127 37372 274 2.776119 7.60656606 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 63.5 7.66e-10   NR KAJ1389255.1 483371 g36879 i0 46.7 0.656934306569343 60 32 65.7 0 270 91 143 202 KAJ1389255.1 hypothetical protein B484DRAFT_459702 [Ochromonadaceae sp. CCMP2298] diamond 180 63.5 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
30860309 30860309 PRJNA1139127_P_NODE_32974_length_299_cov_3.296460_g32481_i0 PRJNA1139127 32974 299 3.29646 9.8564154 Chaetoceros tenuissimus 426638 SAR_Eukaryotes SAR_Eukaryotes 49.7 2.74e-4   NR GFH58591.1 426638 g32481 i0 34.9 0.632107023411371 63 41 63.2 0 194 6 10 72 GFH58591.1 hypothetical protein CTEN210_15067 [Chaetoceros tenuissimus] diamond 189 49.7 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus
31397736 31397736 PRJNA1139127_P_NODE_20756_length_413_cov_1.588235_g20265_i0 PRJNA1139127 20756 413 1.588235 6.55941055 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 232 1.17e-69   NR XP_001033325.2 312017 g20265 i0 98.3 0.835351089588378 115 2 83.5 0 69 413 262 376 XP_001033325.2 kinesin motor catalytic domain protein [Tetrahymena thermophila SB210] diamond 345 232 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31461101 31461101 PRJNA1139127_P_NODE_41916_length_253_cov_1.011111_g41423_i0 PRJNA1139127 41916 253 1.011111 2.55811083 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 104 2.34e-24   NR KAF1330494.1 82926 g41423 i0 59 1.96837944664032 83 34 98.4 0 5 253 291 373 KAF1330494.1 Adenosine kinase, partial [Globisporangium splendens] diamond 498 104 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;