RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1137393" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1137393 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1032088 1032088 PRJNA1137393_P_NODE_48701_length_167_cov_0.881356_g48185_i0 PRJNA1137393 48701 167 0.881356 1.47186452 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 80.9 4.49e-16   NR HEX8386597.1 2838334 g48185 i0 88.7 0.952095808383233 53 6 95.2 0 160 2 314 366 HEX8386597.1 FAD-dependent oxidoreductase [Rubricoccaceae bacterium] diamond 159 80.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
26627207 26627207 PRJNA1137393_P_NODE_68321_length_163_cov_0.912281_g67805_i0 PRJNA1137393 68321 163 0.912281 1.48701803 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 99.8 1.13e-25   NR HEX9950315.1 2838334 g67805 i0 98.1 0.957055214723926 52 1 95.7 0 162 7 47 98 HEX9950315.1 50S ribosomal protein L23 [Rubricoccaceae bacterium] diamond 156 99.8 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
26753548 26753548 PRJNA1137393_P_NODE_71881_length_162_cov_0.920354_g71365_i0 PRJNA1137393 71881 162 0.920354 1.49097348 Salinivenus sp. 1885341 Bacteria Bacteria 50.4 2.43e-5   NR MEF8939627.1 1885341 g71365 i0 63.3 0.907407407407407 49 16 90.7 2 162 16 440 486 MEF8939627.1 hypothetical protein [Salinivenus sp.] diamond 147 50.4 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinivenus Salinivenus sp.
28333655 28333655 PRJNA1137393_P_NODE_48066_length_167_cov_0.881356_g47550_i0 PRJNA1137393 48066 167 0.881356 1.47186452 Rubricoccus marinus 716817 Bacteria Bacteria 82.8 1.01e-16   NR WP_094550053.1 716817 g47550 i0 70.9 0.988023952095808 55 16 98.8 0 2 166 539 593 WP_094550053.1 hypothetical protein [Rubricoccus marinus] diamond 165 82.8 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubricoccus Rubricoccus marinus
29375601 29375601 PRJNA1137393_P_NODE_59409_length_165_cov_0.896552_g58893_i0 PRJNA1137393 59409 165 0.896552 1.4793108 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 42 0.0232   NR HEX9951137.1 2838334 g58893 i0 95.2 0.763636363636364 21 1 38.2 0 101 163 18 38 HEX9951137.1 TSUP family transporter [Rubricoccaceae bacterium] diamond 126 42 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;