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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA1137393" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1137393 · 13 ✖

analysis 1

  • diamond · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
284826 284826 PRJNA1137393_P_NODE_71221_length_162_cov_0.920354_g70705_i0 PRJNA1137393 71221 162 0.920354 1.49097348 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 71.2 7.4e-13   NR HEY4954885.1 2026741 g70705 i0 79.1 1.68518518518519 43 9 79.6 0 131 3 2 44 HEY4954885.1 ring-cleaving dioxygenase [Gemmatimonadaceae bacterium] diamond 273 71.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27639227 27639227 PRJNA1137393_P_NODE_54044_length_166_cov_0.888889_g53528_i0 PRJNA1137393 54044 166 0.888889 1.47555574 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 41.6 0.0348   NR MCX5755190.1 2026742 g53528 i0 44.7 0.849397590361446 47 18 81.3 2 14 148 16 56 MCX5755190.1 UPF0182 family protein [Gemmatimonadota bacterium] diamond 141 41.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27670820 27670820 PRJNA1137393_P_NODE_8764_length_281_cov_1.810345_g8248_i0 PRJNA1137393 8764 281 1.810345 5.08706945 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 43.1 0.0408   NR MYH51855.1 2026742 g8248 i0 41.5 0.693950177935943 65 33 69.4 2 54 248 208 267 MYH51855.1 aminotransferase class V-fold PLP-dependent enzyme [Gemmatimonadota bacterium] diamond 195 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28649551 28649551 PRJNA1137393_P_NODE_62867_length_164_cov_0.904348_g62351_i0 PRJNA1137393 62867 164 0.904348 1.48313072 Gemmatimonadetes bacterium T265 2839016 Bacteria Bacteria 98.2 4.679999999999999e-23   NR GJG89246.1 2839016 g62351 i0 83.3 0.98780487804878 54 9 98.8 0 3 164 34 87 GJG89246.1 hypothetical protein tb265_44270 [Gemmatimonadetes bacterium T265] diamond 162 98.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium T265
29059981 29059981 PRJNA1137393_P_NODE_32088_length_178_cov_1.604651_g31572_i0 PRJNA1137393 32088 178 1.604651 2.85627878 Gemmatimonas sp. 1962908 Bacteria Bacteria 46.2 8.84e-4   NR MQA90362.1 1962908 g31572 i0 70.8 0.404494382022472 24 7 40.4 0 105 176 2 25 MQA90362.1 hypothetical protein [Gemmatimonas sp.] diamond 72 46.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
29470049 29470049 PRJNA1137393_P_NODE_8010_length_295_cov_5.223577_g7494_i0 PRJNA1137393 8010 295 5.223577 15.40955215 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 45.8 0.00556   NR HKH82792.1 2448054 g7494 i0 39.4 0.671186440677966 66 35 66.1 2 86 280 263 324 HKH82792.1 APC family permease [Gemmatimonadales bacterium] diamond 198 45.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29944125 29944125 PRJNA1137393_P_NODE_27151_length_186_cov_1.284672_g26635_i0 PRJNA1137393 27151 186 1.284672 2.38948992 Longimicrobium sp. 2029185 Bacteria Bacteria 100 2.66e-25   NR HEX8245191.1 2029185 g26635 i0 92.5 2.56451612903226 53 4 85.5 0 27 185 1 53 HEX8245191.1 TraR/DksA C4-type zinc finger protein [Longimicrobium sp.] diamond 477 100 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30481172 30481172 PRJNA1137393_P_NODE_53053_length_166_cov_0.888889_g52537_i0 PRJNA1137393 53053 166 0.888889 1.47555574 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 94.4 4.26e-21   NR HET9464089.1 2448054 g52537 i0 92.6 1.95180722891566 54 4 97.6 0 163 2 124 177 HET9464089.1 galactokinase [Gemmatimonadales bacterium] diamond 324 94.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30722825 30722825 PRJNA1137393_P_NODE_51134_length_167_cov_0.881356_g50618_i0 PRJNA1137393 51134 167 0.881356 1.47186452 Pseudomonadati 3379134 Bacteria Bacteria 70.9 5.24e-13   NR NNG17336.1 2448054 g50618 i0 65.4 1.92215568862275 52 18 93.4 0 161 6 150 201 NNG17336.1 trehalose-phosphatase [Gemmatimonadales bacterium] diamond 321 71.6 0.990223463687151 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31271128 31271128 PRJNA1137393_P_NODE_5695_length_363_cov_4.133758_g5179_i0 PRJNA1137393 5695 363 4.133758 15.00554154 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 97.8 3.88e-21   NR HEU5042096.1 2448054 g5179 i0 73.8 0.661157024793388 80 18 65.3 2 7 243 310 387 HEU5042096.1 HD domain-containing protein [Gemmatimonadales bacterium] diamond 240 97.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31998623 31998623 PRJNA1137393_P_NODE_61698_length_164_cov_0.904348_g61182_i0 PRJNA1137393 61698 164 0.904348 1.48313072 Longimicrobium sp. 2029185 Bacteria Bacteria 98.6 2.45e-22   NR WP_325310493.1 2029185 g61182 i0 92.6 0.98780487804878 54 4 98.8 0 163 2 3 56 WP_325310493.1 malate synthase A [Longimicrobium sp.] diamond 162 98.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32630897 32630897 PRJNA1137393_P_NODE_59320_length_165_cov_0.896552_g58804_i0 PRJNA1137393 59320 165 0.896552 1.4793108 Longimicrobiales bacterium 2910168 Bacteria Bacteria 57.4 3.83e-8   NR MDX1492957.1 2910168 g58804 i0 50 0.836363636363636 46 23 83.6 0 164 27 78 123 MDX1492957.1 hypothetical protein [Longimicrobiales bacterium] diamond 138 57.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
32725602 32725602 PRJNA1137393_P_NODE_7380_length_310_cov_6.068966_g6864_i0 PRJNA1137393 7380 310 6.068966 18.8137946 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 42.7 0.044   NR MFN0179075.1 2448054 g6864 i0 39.3 0.590322580645161 61 37 59 0 5 187 89 149 MFN0179075.1 hypothetical protein [Gemmatimonadales bacterium] diamond 183 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;