RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1137393" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1137393 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27386636 27386636 PRJNA1137393_P_NODE_24223_length_191_cov_1.330986_g23707_i0 PRJNA1137393 24223 191 1.330986 2.54218326 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 56.2 3.28e-7   NR CDW72378.1 5949 g23707 i0 56.5 1.44502617801047 46 20 72.3 0 1 138 703 748 CDW72378.1 UNKNOWN [Stylonychia lemnae] diamond 276 56.2 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
29691028 29691028 PRJNA1137393_P_NODE_54650_length_166_cov_0.888889_g54134_i0 PRJNA1137393 54650 166 0.888889 1.47555574 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 67.4 2.67e-11   NR XP_001012580.2 312017 g54134 i0 57.4 0.849397590361446 47 20 84.9 0 142 2 465 511 XP_001012580.2 zinc carboxypeptidase family protein [Tetrahymena thermophila SB210] diamond 141 67.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
30323709 30323709 PRJNA1137393_P_NODE_53352_length_166_cov_0.888889_g52836_i0 PRJNA1137393 53352 166 0.888889 1.47555574 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 57.8 6.59e-8   NR XP_001014787.2 312017 g52836 i0 53.7 0.975903614457831 54 25 97.6 0 162 1 431 484 XP_001014787.2 HELP domain protein [Tetrahymena thermophila SB210] diamond 162 57.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;