RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1137393" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1137393 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28523241 28523241 PRJNA1137393_P_NODE_53507_length_166_cov_0.888889_g52991_i0 PRJNA1137393 53507 166 0.888889 1.47555574 Cyclostephanos tholiformis 382380 SAR_Eukaryotes SAR_Eukaryotes 80.9 4.6e-16   NR KAL3808565.1 382380 g52991 i0 69.8 0.957831325301205 53 16 95.8 0 164 6 2326 2378 KAL3808565.1 hypothetical protein ACHAXA_001070 [Cyclostephanos tholiformis] diamond 159 80.9 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclostephanos Cyclostephanos tholiformis
30986805 30986805 PRJNA1137393_P_NODE_41934_length_169_cov_0.866667_g41418_i0 PRJNA1137393 41934 169 0.866667 1.46466723 Phaeodactylum tricornutum CCAP 1 2850 SAR_Eukaryotes SAR_Eukaryotes 91.7 1.18e-20   NR XP_002177788.1 556484 g41418 i0 80.8 2.85798816568047 52 10 92.3 0 168 13 227 278 XP_002177788.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] diamond 483 91.7 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;