RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1137393" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1137393 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28638682 28638682 PRJNA1137393_P_NODE_55687_length_166_cov_0.888889_g55171_i0 PRJNA1137393 55687 166 0.888889 1.47555574 FCB group 1783270 Bacteria Bacteria 45.4 0.00142   NR HEY3379101.1 2033014 g55171 i0 64.5 3.90361445783133 31 11 56 0 3 95 371 401 HEY3379101.1 FAD-dependent oxidoreductase [Armatimonadota bacterium] diamond 648 45.8 0.991266375545852 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29817512 29817512 PRJNA1137393_P_NODE_64411_length_164_cov_0.904348_g63895_i0 PRJNA1137393 64411 164 0.904348 1.48313072 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 56.2 2.19e-7   NR MBC8066543.1 2682144 g63895 i0 59.2 0.896341463414634 49 20 89.6 0 147 1 1 49 MBC8066543.1 LCP family protein [Fimbriimonadaceae bacterium] diamond 147 56.2 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
30291966 30291966 PRJNA1137393_P_NODE_43192_length_168_cov_1.596639_g42676_i0 PRJNA1137393 43192 168 1.596639 2.68235352 Armatimonadota bacterium 2033014 Bacteria Bacteria 102 3.13e-24   NR MBV9849596.1 2033014 g42676 i0 90.9 0.982142857142857 55 5 98.2 0 165 1 27 81 MBV9849596.1 type II and III secretion system protein [Armatimonadota bacterium] diamond 165 102 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30860298 30860298 PRJNA1137393_P_NODE_42354_length_169_cov_0.866667_g41838_i0 PRJNA1137393 42354 169 0.866667 1.46466723 Armatimonadota bacterium 2033014 Bacteria Bacteria 96.7 1.4200000000000002e-21   NR MBC8140416.1 2033014 g41838 i0 85.7 0.994082840236686 56 8 99.4 0 169 2 751 806 MBC8140416.1 DUF1592 domain-containing protein [Armatimonadota bacterium] diamond 168 96.7 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
31903612 31903612 PRJNA1137393_P_NODE_55377_length_166_cov_0.888889_g54861_i0 PRJNA1137393 55377 166 0.888889 1.47555574 Capsulimonadaceae bacterium 2953755 Bacteria Bacteria 67.8 1.95e-11   NR MDR3709200.1 2953755 g54861 i0 58 0.903614457831325 50 21 90.4 0 16 165 285 334 MDR3709200.1 glycosyltransferase [Capsulimonadaceae bacterium] diamond 150 67.8 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae   Capsulimonadaceae bacterium
32682998 32682998 PRJNA1137393_P_NODE_33620_length_176_cov_1.543307_g33104_i0 PRJNA1137393 33620 176 1.543307 2.71622032 Bacteria 2 Bacteria Bacteria 88.6 1.07e-18   NR MBC8101046.1 2033014 g33104 i0 75 2.89772727272727 56 14 95.5 0 176 9 103 158 MBC8101046.1 glycoside hydrolase family 92 protein [Armatimonadota bacterium] diamond 510 89 0.995505617977528 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;