RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1137393" and tax_clade = "Sar"

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tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1137393 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27386636 27386636 PRJNA1137393_P_NODE_24223_length_191_cov_1.330986_g23707_i0 PRJNA1137393 24223 191 1.330986 2.54218326 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 56.2 3.28e-7   NR CDW72378.1 5949 g23707 i0 56.5 1.44502617801047 46 20 72.3 0 1 138 703 748 CDW72378.1 UNKNOWN [Stylonychia lemnae] diamond 276 56.2 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
28523241 28523241 PRJNA1137393_P_NODE_53507_length_166_cov_0.888889_g52991_i0 PRJNA1137393 53507 166 0.888889 1.47555574 Cyclostephanos tholiformis 382380 SAR_Eukaryotes SAR_Eukaryotes 80.9 4.6e-16   NR KAL3808565.1 382380 g52991 i0 69.8 0.957831325301205 53 16 95.8 0 164 6 2326 2378 KAL3808565.1 hypothetical protein ACHAXA_001070 [Cyclostephanos tholiformis] diamond 159 80.9 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclostephanos Cyclostephanos tholiformis
29501810 29501810 PRJNA1137393_P_NODE_39630_length_169_cov_0.866667_g39114_i0 PRJNA1137393 39630 169 0.866667 1.46466723 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 39.3 0.0482   NR RHZ01083.1 112090 g39114 i0 61.5 0.461538461538462 26 10 46.2 0 2 79 40 65 RHZ01083.1 hypothetical protein DYB35_007189 [Aphanomyces astaci] diamond 78 39.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
29691028 29691028 PRJNA1137393_P_NODE_54650_length_166_cov_0.888889_g54134_i0 PRJNA1137393 54650 166 0.888889 1.47555574 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 67.4 2.67e-11   NR XP_001012580.2 312017 g54134 i0 57.4 0.849397590361446 47 20 84.9 0 142 2 465 511 XP_001012580.2 zinc carboxypeptidase family protein [Tetrahymena thermophila SB210] diamond 141 67.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
30323709 30323709 PRJNA1137393_P_NODE_53352_length_166_cov_0.888889_g52836_i0 PRJNA1137393 53352 166 0.888889 1.47555574 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 57.8 6.59e-8   NR XP_001014787.2 312017 g52836 i0 53.7 0.975903614457831 54 25 97.6 0 162 1 431 484 XP_001014787.2 HELP domain protein [Tetrahymena thermophila SB210] diamond 162 57.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
30533309 30533309 PRJNA1137393_P_NODE_15713_length_219_cov_1.170588_g15197_i0 PRJNA1137393 15713 219 1.170588 2.56358772 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 51.2 2.45e-6   NR SCL93381.1 5821 g15197 i0 65.6 11.1643835616438 32 11 43.8 0 122 217 2 33 SCL93381.1 hypothetical protein PBNK65NY_000087000 [Plasmodium berghei] diamond 2445 51.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
30986805 30986805 PRJNA1137393_P_NODE_41934_length_169_cov_0.866667_g41418_i0 PRJNA1137393 41934 169 0.866667 1.46466723 Phaeodactylum tricornutum CCAP 1 2850 SAR_Eukaryotes SAR_Eukaryotes 91.7 1.18e-20   NR XP_002177788.1 556484 g41418 i0 80.8 2.85798816568047 52 10 92.3 0 168 13 227 278 XP_002177788.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] diamond 483 91.7 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;