RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1137393" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1137393 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28302084 28302084 PRJNA1137393_P_NODE_57666_length_165_cov_0.896552_g57150_i0 PRJNA1137393 57666 165 0.896552 1.4793108 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 41.2 0.0459   NR PRP83539.1 1890364 g57150 i0 53.1 0.581818181818182 32 15 58.2 0 160 65 64 95 PRP83539.1 elastin [Planoprotostelium fungivorum] diamond 96 41.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30133208 30133208 PRJNA1137393_P_NODE_16252_length_216_cov_1.245509_g15736_i0 PRJNA1137393 16252 216 1.245509 2.69029944 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 74.7 6.03e-14   NR PRP81122.1 1890364 g15736 i0 62.7 0.819444444444444 59 22 81.9 0 215 39 224 282 PRP81122.1 60S ribosomal protein L7a [Planoprotostelium fungivorum] diamond 177 74.7 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30249255 30249255 PRJNA1137393_P_NODE_50492_length_167_cov_0.881356_g49976_i0 PRJNA1137393 50492 167 0.881356 1.47186452 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 45.4 0.0015   NR XP_004338155.1 1257118 g49976 i0 44.4 1.58083832335329 45 25 80.8 0 8 142 70 114 XP_004338155.1 uncharacterized protein ACA1_177500 [Acanthamoeba castellanii str. Neff] diamond 264 45.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;