contig_metadata
5 rows where analysis = "diamond", bioproject = "PRJNA1136957" and tax_phylum = "Actinomycetota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26721759 | 26721759 | PRJNA1136957_S_NODE_15341_length_222_cov_1.460123_g15244_i0 | PRJNA1136957 | 15341 | 222 | 1.460123 | 3.24147306 | unclassified Streptomyces | 2593676 | Bacteria | Bacteria | 43.1 | 0.02 | NR | WP_241842784.1 | 2593676 | g15244 | i0 | 46.9 | 0.662162162162162 | 49 | 24 | 63.5 | 1 | 199 | 59 | 26 | 74 | WP_241842784.1 MULTISPECIES: hypothetical protein [unclassified Streptomyces] | diamond | 147 | 43.1 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | |||
| 29438374 | 29438374 | PRJNA1136957_S_NODE_20350_length_195_cov_0.897059_g20253_i0 | PRJNA1136957 | 20350 | 195 | 0.897059 | 1.74926505 | Kitasatospora indigofera | 67307 | Bacteria | Bacteria | 44.7 | 0.0042 | NR | WP_355657059.1 | 67307 | g20253 | i0 | 33.3 | 0.969230769230769 | 63 | 41 | 96.9 | 1 | 7 | 195 | 49 | 110 | WP_355657059.1 acyl-CoA thioesterase/bile acid-CoA:amino acid N-acyltransferase family protein [Kitasatospora indigofera] | diamond | 189 | 44.7 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Kitasatospora | Kitasatospora indigofera | ||
| 29881018 | 29881018 | PRJNA1136957_S_NODE_2671_length_436_cov_2.442971_g2574_i0 | PRJNA1136957 | 2671 | 436 | 2.442971 | 10.65135356 | Streptomyces sp. Rer75 | 2750011 | Bacteria | Bacteria | 43.5 | 0.0313 | NR | QLH27388.1 | 2750011 | g2574 | i0 | 42.1 | 0.784403669724771 | 57 | 31 | 37.8 | 1 | 281 | 117 | 53 | 109 | QLH27388.1 MFS transporter [Streptomyces sp. Rer75] | diamond | 342 | 43.5 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces sp. Rer75 | ||
| 31418225 | 31418225 | PRJNA1136957_S_NODE_13516_length_235_cov_1.039773_g13419_i0 | PRJNA1136957 | 13516 | 235 | 1.039773 | 2.44346655 | Streptomyces | 1883 | Bacteria | Bacteria | 80.5 | 1.72e-15 | NR | WP_250402383.1 | 67285 | g13419 | i0 | 52.9 | 5.47659574468085 | 70 | 33 | 89.4 | 0 | 1 | 210 | 628 | 697 | WP_250402383.1 neutral/alkaline ceramidase [Streptomyces cellostaticus] | diamond | 1287 | 81.3 | 0.990159901599016 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces cellostaticus | ||
| 31461085 | 31461085 | PRJNA1136957_S_NODE_8916_length_283_cov_1.691964_g8819_i0 | PRJNA1136957 | 8916 | 283 | 1.691964 | 4.78825812 | Acidimicrobiales bacterium | 2201156 | Bacteria | Bacteria | 62.8 | 1.72e-9 | NR | MET0160153.1 | 2201156 | g8819 | i0 | 56.5 | 0.657243816254417 | 62 | 20 | 65.7 | 1 | 282 | 97 | 129 | 183 | MET0160153.1 oligoribonuclease [Acidimicrobiales bacterium] | diamond | 186 | 62.8 | 1 | Bacteria | Bacillati | Actinomycetota | Acidimicrobiia | Acidimicrobiales | Acidimicrobiales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;