RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1136957" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1136957 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26627185 26627185 PRJNA1136957_S_NODE_10321_length_266_cov_0.884058_g10224_i0 PRJNA1136957 10321 266 0.884058 2.35159428 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 43.5 0.0257   NR XP_002681807.1 5762 g10224 i0 42.4 0.665413533834586 59 32 66.5 1 26 202 400 456 XP_002681807.1 uncharacterized protein NAEGRDRAFT_63009 [Naegleria gruberi] diamond 177 43.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
27101893 27101893 PRJNA1136957_S_NODE_16442_length_215_cov_1.173077_g16345_i0 PRJNA1136957 16442 215 1.173077 2.52211555 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 75.1 1.01e-13   NR XP_044550459.1 51637 g16345 i0 50.7 2.97209302325581 71 34 99.1 1 214 2 513 582 XP_044550459.1 uncharacterized protein C9374_002211 [Naegleria lovaniensis] diamond 639 75.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
29375584 29375584 PRJNA1136957_S_NODE_15329_length_222_cov_1.496933_g15232_i0 PRJNA1136957 15329 222 1.496933 3.32319126 Leishmania naiffi 5678 Euglenozoa other_Eukaryota 41.6 0.046   NR KAL0530592.1 5678 g15232 i0 46 0.675675675675676 50 25 64.9 1 221 78 35 84 KAL0530592.1 putative ABC-2 family transporter protein [Leishmania naiffi] diamond 150 41.6 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania naiffi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;