RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1136505" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1136505 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27765528 27765528 PRJNA1136505_P_NODE_80624_length_325_cov_1.527778_g73764_i0 PRJNA1136505 80624 325 1.527778 4.9652785 Amoeba proteus 5775 Tubulinea other_Eukaryota 118 3.32e-28   NR AKN09691.1 5775 g73764 i0 49.1 0.978461538461538 106 54 97.8 0 5 322 477 582 AKN09691.1 Tom70 [Amoeba proteus] diamond 318 118 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
28238716 28238716 PRJNA1136505_P_NODE_71706_length_348_cov_1.254545_g64846_i0 PRJNA1136505 71706 348 1.254545 4.3658166 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 147 8.179999999999999e-43   NR ABD72565.1 5778 g64846 i0 67.7 0.827586206896552 96 31 82.8 0 290 3 1 96 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 288 147 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
31366146 31366146 PRJNA1136505_P_NODE_27556_length_773_cov_1.860000_g20938_i0 PRJNA1136505 27556 773 1.86 14.3778 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 127 3.75e-33   NR ABD72565.1 5778 g20938 i0 49.3 0.520051746442432 134 63 50.1 2 58 444 2 135 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 402 127 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;