RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1136505" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1136505 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28775619 28775619 PRJNA1136505_P_NODE_106247_length_280_cov_1.444444_g99387_i0 PRJNA1136505 106247 280 1.444444 4.0444432 Armatimonadota bacterium 2033014 Bacteria Bacteria 58.5 1.59e-7   NR MCC6442848.1 2033014 g99387 i0 36.1 3.03214285714286 97 54 95.4 2 278 12 753 849 MCC6442848.1 hypothetical protein [Armatimonadota bacterium] diamond 849 58.5 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28997025 28997025 PRJNA1136505_P_NODE_128008_length_253_cov_1.455556_g121148_i0 PRJNA1136505 128008 253 1.455556 3.68255668 Armatimonadota bacterium 2033014 Bacteria Bacteria 97.4 2.1500000000000003e-21   NR MCX6344520.1 2033014 g121148 i0 66.7 0.960474308300395 81 25 96 1 3 245 93 171 MCX6344520.1 hydroxylamine reductase [Armatimonadota bacterium] diamond 243 97.4 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
31050136 31050136 PRJNA1136505_P_NODE_114095_length_270_cov_1.365482_g107235_i0 PRJNA1136505 114095 270 1.365482 3.6868014 Armatimonadota bacterium 2033014 Bacteria Bacteria 128 4.02e-33   NR MBS1719853.1 2033014 g107235 i0 72.6 0.933333333333333 84 23 93.3 0 260 9 1 84 MBS1719853.1 GIY-YIG nuclease family protein [Armatimonadota bacterium] diamond 252 128 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;