RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1136505" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1136505 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27828497 27828497 PRJNA1136505_P_NODE_23284_length_943_cov_5.862069_g16993_i0 PRJNA1136505 23284 943 5.862069 55.27931067 Besnoitia besnoiti 94643 SAR_Eukaryotes SAR_Eukaryotes 282 6.22e-92   NR XP_029221002.1 94643 g16993 i0 66.4 27.8748674443266 217 72 69 1 901 251 1 216 XP_029221002.1 ribosomal protein RPL10A [Besnoitia besnoiti] diamond 26286 282 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
29806599 29806599 PRJNA1136505_P_NODE_93631_length_299_cov_1.004425_g86771_i0 PRJNA1136505 93631 299 1.004425 3.00323075 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 119 1.2699999999999998e-31   NR CDJ45709.1 51314 g86771 i0 56 6.06020066889632 100 41 97.3 1 293 3 59 158 CDJ45709.1 hypothetical protein EBH_0061260 [Eimeria brunetti] diamond 1812 119 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria brunetti
30291943 30291943 PRJNA1136505_P_NODE_53092_length_424_cov_1.233618_g46233_i0 PRJNA1136505 53092 424 1.233618 5.23054032 Besnoitia besnoiti 94643 SAR_Eukaryotes SAR_Eukaryotes 182 1.14e-53   NR XP_029215426.1 94643 g46233 i0 69.9 1.77594339622642 123 36 86.3 1 369 4 5 127 XP_029215426.1 putative phosphate carrier [Besnoitia besnoiti] diamond 753 182 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;