RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1132896" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1132896 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10487181 10487181 PRJNA1132896_P_NODE_809_length_572_cov_1.737475_g719_i0 PRJNA1132896 809 572 1.737475 9.938357 Rhabditida 6236 Nematoda Nematoda 266 2.1800000000000002e-86   NR VDM46117.1 6265 g719 i0 73.7 3.90734265734266 186 45 97.6 2 14 571 1 182 VDM46117.1 unnamed protein product [Toxocara canis] diamond 2235 267 0.99625468164794 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
31291610 31291610 PRJNA1132896_P_NODE_5015_length_274_cov_2.651741_g4924_i0 PRJNA1132896 5015 274 2.651741 7.26577034 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 124 3.3799999999999995e-32   NR XP_024506305.1 34506 g4924 i0 62.1 6.7007299270073 87 33 95.3 0 13 273 168 254 XP_024506305.1 Cyclin-dependent kinase 1 [Strongyloides ratti] diamond 1836 125 0.992 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
32536650 32536650 PRJNA1132896_P_NODE_2019_length_380_cov_2.003257_g1928_i0 PRJNA1132896 2019 380 2.003257 7.6123766 Aphelenchoides avenae 70226 Nematoda Nematoda 86.3 9.92e-17   NR KAH7725399.1 70226 g1928 i0 38.5 1.86315789473684 117 68 92.4 1 359 9 250 362 KAH7725399.1 V-ATPase subunit C family protein [Aphelenchoides avenae] diamond 708 86.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;